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Include version in query hash #6841

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@greenape greenape commented Oct 22, 2024

Closes #4489

I have:

  • Formatted any Python files with black
  • Brought the branch up to date with master
  • Added any relevant Github labels
  • Added tests for any new additions
  • Added or updated any relevant documentation
  • Added an Architectural Decision Record (ADR), if appropriate
  • Added an MPLv2 License Header if appropriate
  • Updated the Changelog

Description

Includes the value of __version__ in query_id hashing, which makes the cached versioned to avoid accidentally pulling in an incompatible cache table. (Where we rely on knowing the query id in tests, I have monkeypatched the __version__ attribute to a fixed value)

Summary by CodeRabbit

Release Notes

  • New Features

    • Flowmachine now includes version numbers in query IDs for improved cache management.
    • The API now supports modes for categorical metrics when running joined spatial aggregates.
  • Bug Fixes

    • Resolved an issue with dangling asynchronous tasks during server shutdown to prevent resource leaks.
  • Requirements

    • FlowMachine now requires Python version 3.11 or higher.
  • Deprecations

    • Removed support for the Oracle foreign data wrapper (fdw).

@greenape greenape added enhancement New feature or request FlowMachine Issues related to FlowMachine labels Oct 22, 2024
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cypress bot commented Oct 22, 2024

FlowAuth    Run #24002

Run Properties:  status check passed Passed #24002  •  git commit 4287e60001: Raise notimplemented for stubs
Project FlowAuth
Branch Review versioned-cache
Run status status check passed Passed #24002
Run duration 00m 45s
Commit git commit 4287e60001: Raise notimplemented for stubs
Committer Jonathan Gray
View all properties for this run ↗︎

Test results
Tests that failed  Failures 0
Tests that were flaky  Flaky 0
Tests that did not run due to a developer annotating a test with .skip  Pending 0
Tests that did not run due to a failure in a mocha hook  Skipped 0
Tests that passed  Passing 4
View all changes introduced in this branch ↗︎

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codecov bot commented Oct 22, 2024

Codecov Report

Attention: Patch coverage is 89.47368% with 2 lines in your changes missing coverage. Please review.

Project coverage is 92.15%. Comparing base (5317388) to head (4287e60).

Files with missing lines Patch % Lines
flowmachine/flowmachine/core/query_stub.py 81.81% 2 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##           master    #6841   +/-   ##
=======================================
  Coverage   92.15%   92.15%           
=======================================
  Files         275      276    +1     
  Lines       10755    10760    +5     
  Branches     1297     1298    +1     
=======================================
+ Hits         9911     9916    +5     
  Misses        691      691           
  Partials      153      153           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Where we rely on knowing the query id in tests, I have monkeypatched the `__version__` attribute
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📥 Commits

Reviewing files that changed from the base of the PR and between eadc498 and cee9a1c.

Walkthrough

The pull request introduces several significant changes to the FlowKit codebase. Key updates include the addition of version numbers in query IDs to enhance cache management, improved error handling for asynchronous tasks during server shutdown, and the requirement for Python version 3.11 or higher. A new class, QStub, has been introduced, and modifications have been made to various caching and query functionalities. Additionally, the test suite has been updated to cover new features and ensure compatibility with versioning changes.

Changes

File Path Change Summary
flowmachine/core/cache.py Enhanced error handling in get_obj_or_stub, moved QStub class, updated SQL query in get_query_object_by_id to include version, added debugging output.
flowmachine/core/query.py Updated query_id generation to include flowmachine.__version__ for uniqueness.
flowmachine/core/query_stub.py Introduced QStub class with initial attributes and methods.
flowmachine/tests/test_cache.py Added test_retrieve_query_other_version to verify query retrieval across versions.
flowmachine/tests/test_cache_utils.py Added test_get_query_object_by_id_other_version to check for ValueError on version mismatch.
flowmachine/tests/test_dependency_graph.py Updated test_print_dependency_tree to include monkeypatch for version control.
flowmachine/tests/test_query_object_construction.py Added monkeypatch to test_construct_query for version simulation, expanded test cases.
flowmachine/tests/test_table.py Updated test_dependencies to include monkeypatch for version control.
flowmachine/tests/test_query_object_construction.test_construct_query.approved.txt Updated JSON structure for query configurations with new identifiers and structural changes.

Assessment against linked issues

Objective Addressed Explanation
Add version field per query for caching (4489)

🐇 In the meadow, we hop and play,
With queries that now know their way!
Each version saved, no cache to dread,
In FlowKit's world, we leap ahead!
So let us cheer, with joy and delight,
For every change makes our future bright! 🌟


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Auto Pull Request Review from LlamaPReview

1. Change Overview

1.1 Core Changes

  • Primary purpose and scope: Include the value of __version__ in query_id hashing to avoid accidentally pulling in an incompatible cache table. This ensures that cached queries are version-specific, preventing conflicts between different versions of FlowKit.
  • Key components modified: flowmachine/core/cache.py, flowmachine/core/query.py, flowmachine/core/query_stub.py, and various test files.
  • Cross-component impacts: The changes impact how queries are hashed and stored, affecting the caching mechanism across the system.
  • Business value alignment: Ensures that cached data is consistent with the current version of FlowKit, preventing potential data corruption or incorrect results due to version mismatches.

1.2 Technical Architecture (if applicable)

  • System design modifications: Introduction of versioning in query hashing to maintain consistency with FlowKit versions.
  • Component interaction changes: The query hashing process now includes the FlowKit version, affecting how dependencies are stored and retrieved.
  • Integration points impact: The changes primarily impact the caching mechanism and how queries interact with the cache.
  • Dependency changes and implications: Introduction of a new dependency on the FlowKit version for query hashing.

2. Deep Technical Analysis

2.1 Code Logic Analysis

[IMPORTANT: You MUST repeat this block for EVERY significant code logic finding in the PR. Do not limit to just one example. Analyze ALL relevant code changes and their implications]

flowmachine/flowmachine/core/cache.py

  • Submitted PR Code:
    def get_obj_or_stub(connection: "Connection", query_id: str):
        ...
        try:
            return get_query_object_by_id(connection, query_id)
        except (
            EOFError,
            ModuleNotFoundError,
            AttributeError,
            pickle.UnpicklingError,
            IndexError,
  •     ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )
    
    - **Analysis:**
      * Current logic and potential issues: The `get_obj_or_stub` function handles exceptions when unpickling query objects and creates a stub if necessary. The addition of `ValueError` to the exception handling ensures that version mismatches are properly handled.
      * Edge cases and error handling: The new logic handles the scenario where the query version does not match the current FlowKit version, raising a `ValueError`.
      * Cross-component impact (if applicable): This change impacts how queries are retrieved from the cache, ensuring version consistency.
      * Business logic considerations (if applicable): Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
    - **LlamaPReview Suggested Improvements:**
      ```python
      # No specific improvements suggested for this block; the added exception handling is appropriate.
    
    • Improvement rationale (if applicable):
      • Technical benefits: Ensures that cached queries are version-specific, preventing data corruption.
      • Business value: Maintains data integrity and consistency.
      • Risk assessment: Low risk; the change is a safeguard against version mismatches.

flowmachine/flowmachine/core/query.py

  • Submitted PR Code:
    def _generate_query_id(self):
        ...
        hashes.append(str(item))
  • hashes.sort()
    hashes.append(self.__class__.__name__)
    
  • hashes.sort()
    
  • hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5
    
    - **Analysis:**
      * Current logic and potential issues: The `_generate_query_id` function generates a unique identifier for queries based on their attributes. The addition of the FlowKit version to the hash ensures that query IDs are version-specific.
      * Edge cases and error handling: The new logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
      * Cross-component impact (if applicable): This change impacts how queries are identified and stored, ensuring version consistency.
      * Business logic considerations (if applicable): Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
    - **LlamaPReview Suggested Improvements:**
      ```python
      # No specific improvements suggested for this block; the change is appropriate for version-specific query IDs.
    
    • Improvement rationale (if applicable):
      • Technical benefits: Ensures that query IDs are version-specific, preventing data corruption.
      • Business value: Maintains data integrity and consistency.
      • Risk assessment: Low risk; the change is a safeguard against version mismatches.

2.2 Implementation Quality (if applicable)

  • Code Structure:

    • Organization and modularity: The changes are well-organized and modular, with new functionality encapsulated in appropriate methods and classes.
    • Design pattern adherence: The use of versioning in query hashing follows good design practices for ensuring data consistency.
    • Reusability aspects: The changes are reusable and do not introduce unnecessary complexity.
    • Maintainability factors: The code is well-documented and easy to understand, facilitating future maintenance.
  • Error Handling:

    • Exception scenarios coverage: The addition of ValueError to the exception handling in get_obj_or_stub ensures that version mismatches are properly handled.
    • Recovery mechanisms: The use of stubs when unpickling fails provides a fallback mechanism for query retrieval.
    • Logging and monitoring: The logging statements provide visibility into the unpickling process, aiding in debugging and monitoring.
    • User experience impact: The changes improve the robustness of the caching mechanism, ensuring consistent and reliable data retrieval.
  • Performance Considerations:

    • Resource utilization: The changes do not introduce significant resource overhead.
    • Scalability aspects: The versioning mechanism scales well with the existing caching infrastructure.
    • Bottleneck analysis: No new bottlenecks are introduced; the changes are optimized for performance.
    • Optimization opportunities: No specific optimization opportunities identified; the changes are well-optimized.

3. Risk Assessment (if applicable)

3.1 Critical Issues

🔴 P0 (Must Fix):
[Repeat this block for each critical issue]

  • Issue: No critical issues identified in the submitted PR.
  • Impact: N/A
  • Resolution: N/A

3.2 Important Improvements

🟡 P1 (Should Fix):
[Repeat this block for each important issue]

  • Issue: No important improvements identified in the submitted PR.
  • Current Impact: N/A
  • Suggested Solution: N/A

3.3 Minor Suggestions

🟢 P2 (Consider):
[Repeat this block for each suggestion]

  • Area: Documentation updates
  • Improvement Opportunity:
    • Although the code changes are well-documented, consider updating the documentation to reflect the new versioning mechanism in query hashing.
    • Include examples and best practices for handling version-specific cached queries.

4. Requirements Analysis (if applicable)

4.1 Functional Coverage

  • Requirements mapping:
    • Implemented features: The PR includes the FlowKit version in query hashing, ensuring version-specific cached queries.
    • Missing elements: The documentation updates checkbox is not marked, indicating that documentation may need to be updated.
    • Edge cases handling: The PR includes appropriate exception handling for version mismatches, ensuring robustness.
  • Business Logic:
    • Use case coverage: The changes cover the use case of ensuring version-specific cached queries.
    • Business rule implementation: The changes implement the business rule of version-specific query hashing.
    • Data flow correctness: The changes ensure that cached queries are consistent with the current version of FlowKit, preventing data corruption.

4.2 Non-functional Aspects (if applicable)

  • Performance metrics: The changes do not introduce significant performance overhead.
  • Security considerations: The changes do not introduce new security risks.
  • Scalability factors: The versioning mechanism scales well with the existing caching infrastructure.
  • Maintainability aspects: The code is well-documented and easy to understand, facilitating future maintenance.

5. Testing Strategy (if applicable)

  • Test Coverage:
    • Unit test requirements: The PR includes tests for the new versioning mechanism in query hashing.
    • Integration test scenarios: The PR includes integration tests to ensure the caching mechanism works correctly with version-specific queries.
    • Edge case validation: The PR includes tests for handling version mismatches and creating query stubs.
  • Quality Metrics:
    • Current coverage: The tests cover the new functionality and edge cases, ensuring robustness.
    • Critical paths: The tests cover critical paths related to query hashing and caching.
    • Performance benchmarks: The changes do not introduce significant performance overhead.

6. Final Assessment

6.1 Key Action Items

  1. Critical Changes (P0):

    • No critical changes identified.
  2. Important Improvements (P1):

    • No important improvements identified.
  3. Suggested Enhancements (P2):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.

6.2 Overall Evaluation

  • Technical assessment: The changes are well-implemented and aligned with best practices for ensuring data consistency.
  • Business impact: The changes ensure that cached queries are version-specific, preventing data corruption and maintaining data integrity.
  • Risk evaluation: The changes are low risk and introduce necessary safeguards against version mismatches.
  • Implementation quality: The code is well-organized, modular, and maintainable, with appropriate error handling and logging.

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Actionable comments posted: 3

🧹 Outside diff range and nitpick comments (13)
flowmachine/flowmachine/core/query_stub.py (1)

10-11: Consider renaming parameters for clarity.

The parameter qid is stored in _md5, suggesting it's a hash. Consider consistent naming:

-    def __init__(self, deps, qid):
-        self.deps = deps
-        self._md5 = qid
+    def __init__(self, deps, query_id_hash):
+        self.deps = deps
+        self._md5 = query_id_hash
flowmachine/tests/test_dependency_graph.py (2)

39-39: Consider using a constant for the test version

Whilst the implementation is correct, consider defining TEST_VERSION as a module-level constant. This would make it easier to maintain and reuse across multiple tests.

+TEST_VERSION = "1.0.0-test"
+
 def test_print_dependency_tree(monkeypatch):
-    monkeypatch.setattr("flowmachine.__version__", "TEST_VERSION")
+    monkeypatch.setattr("flowmachine.__version__", TEST_VERSION)

54-67: Consider using a more maintainable approach for testing tree structure

The current approach of comparing against a hardcoded string makes the test brittle and difficult to maintain. Consider using a more structured approach:

  1. Parse the output into a tree structure
  2. Assert on specific relationships or properties
  3. Use snapshot testing if available in your test framework

This would make the test more resilient to formatting changes whilst still ensuring correct functionality.

Example approach:

def parse_tree_output(output: str) -> dict:
    """Parse the tree output into a structured format."""
    # Implementation details...

def test_print_dependency_tree(monkeypatch):
    # ... existing setup ...
    
    tree = parse_tree_output(output_with_query_ids_replaced)
    
    # Assert specific relationships
    assert "MostFrequentLocation" in tree
    assert "SubscriberLocations" in tree["MostFrequentLocation"]["children"]
    assert "AdminSpatialUnit" in tree["MostFrequentLocation"]["children"]["SubscriberLocations"]["children"]
flowmachine/tests/test_cache.py (1)

337-347: Consider expanding test coverage

To strengthen the version-aware caching tests, consider adding:

  1. Test retrieving a newer version query from an older version context
  2. Verify the actual version values in the retrieved QStub
  3. Test the behaviour when executing queries via the QStub

Here's a suggested additional test:

def test_retrieve_query_version_attributes(flowmachine_connect, monkeypatch):
    """Test that QStub correctly preserves version information."""
    with monkeypatch.context() as ctxt:
        ctxt.setattr("flowmachine.__version__", "OLD_VERSION")
        ctxt.setattr("flowmachine.core.cache.__version__", "OLD_VERSION")
        dl = daily_location("2016-01-01").store().result()
        old_version = dl.__version__
    
    stub = get_obj_or_stub(get_db(), dl.query_id)
    assert stub.version == old_version
    assert stub.__version__ != old_version  # Should be current version
flowmachine/tests/test_cache_utils.py (1)

392-407: Good test implementation, consider additional test cases

The test effectively verifies version mismatch handling. Consider enhancing test coverage with:

  1. A positive test case where versions match
  2. Verification that cache state remains unchanged after version mismatch error

Example additional test:

def test_get_query_object_by_id_same_version(flowmachine_connect):
    """
    Test that query retrieval succeeds with matching versions.
    """
    dl = daily_location("2016-01-01").store().result()
    retrieved_query = get_query_object_by_id(get_db(), dl.query_id)
    assert dl.query_id == retrieved_query.query_id
    assert dl.is_stored
flowmachine/tests/test_query_object_construction.test_construct_query.approved.txt (3)

Line range hint 4-22: Consider adding validation for sampling parameters

The sampling configuration allows both size and fraction parameters, but only one should be used at a time. Currently, fraction is null when size is specified, but this constraint isn't explicitly validated.

Consider adding validation to ensure only one of size or fraction is specified:

    "sampling": {
      "sampling_method": "bernoulli",
+     "size": 10 if "size" in locals() else None,
+     "fraction": fraction if "fraction" in locals() else None,
-     "size": 10,
-     "fraction": null,
      "estimate_count": false
    }

Line range hint 358-373: Standardise join_type values across flow queries

There's an inconsistency in join types between flow queries. One uses "left outer" while another omits it entirely. This could lead to unexpected behaviour differences.

Standardise the join type across all flow queries:

    "query_kind": "flows",
    "from_location": {
      // ... location config ...
    },
    "to_location": {
      // ... location config ...
    },
+   "join_type": "left outer"

Also applies to: 374-420


Line range hint 421-642: Consider extracting common location configurations

The labelled_spatial_aggregate and labelled_flows queries contain duplicate location configurations. This increases maintenance overhead and the risk of inconsistencies.

Consider extracting these common configurations into reusable templates or factory methods to:

  1. Reduce duplication
  2. Ensure consistency
  3. Simplify maintenance
  4. Make the test data more maintainable

Also applies to: 643-865

flowmachine/flowmachine/core/query.py (1)

117-118: LGTM! Version-aware query ID implementation.

The implementation correctly incorporates the version into the query ID hash, ensuring cache invalidation when the SQL for a query changes across versions.

Consider adding a comment explaining the version's role in cache invalidation:

             hashes.append(self.__class__.__name__)
+            # Include version to invalidate cache when query implementation changes
             hashes.append(flowmachine.__version__)
flowmachine/tests/test_query_object_construction.py (1)

Line range hint 4-6: Consider implementing the TODO for more compact test examples.

The current test examples, particularly for 'labelled_flows', could be more concise. This would improve test maintainability and readability.

Would you like assistance in creating more compact test examples for the labelled flows?

CHANGELOG.md (3)

13-14: Consider adding more details about versioning impact

While the change description accurately reflects the addition of version to query hashes, it would be helpful to explicitly mention the impact on cache invalidation and backward compatibility.

-Flowmachine now includes the version number in query ids which means cache entries are per-version. [#4489](https://github.com/Flowminder/FlowKit/issues/4489) 
+Flowmachine now includes the version number in query ids which means cache entries are per-version, ensuring cached queries from previous versions cannot be accidentally reused when query implementations change. [#4489](https://github.com/Flowminder/FlowKit/issues/4489)

Line range hint 16-19: Add rationale for Python version requirement

The changelog would benefit from explaining why Python 3.11 is now required. This helps users understand the motivation behind the breaking change.

### Changed
-FlowMachine now requires python >= 3.11
+FlowMachine now requires Python >= 3.11 to take advantage of improved performance and new language features
🧰 Tools
🪛 LanguageTool

[duplication] ~15-~15: Possible typo: you repeated a word
Context: ...m//issues/4489) ### Fixed - Fixed dangling async tasks not being properly...

(ENGLISH_WORD_REPEAT_RULE)


Line range hint 1-1141: Maintain consistent capitalization of "Python"

Throughout the changelog, there are inconsistencies in how "Python" is capitalized. Sometimes it's "python", other times "Python". For consistency, it should always be capitalized as it's a proper noun.

Consider doing a global search and replace to ensure "Python" is always capitalized when referring to the programming language.

🧰 Tools
🪛 LanguageTool

[duplication] ~15-~15: Possible typo: you repeated a word
Context: ...m//issues/4489) ### Fixed - Fixed dangling async tasks not being properly...

(ENGLISH_WORD_REPEAT_RULE)

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📥 Commits

Reviewing files that changed from the base of the PR and between 5317388 and 5010d30.

📒 Files selected for processing (10)
  • CHANGELOG.md (1 hunks)
  • flowmachine/flowmachine/core/cache.py (5 hunks)
  • flowmachine/flowmachine/core/query.py (1 hunks)
  • flowmachine/flowmachine/core/query_stub.py (1 hunks)
  • flowmachine/tests/test_cache.py (3 hunks)
  • flowmachine/tests/test_cache_utils.py (3 hunks)
  • flowmachine/tests/test_dependency_graph.py (2 hunks)
  • flowmachine/tests/test_query_object_construction.py (2 hunks)
  • flowmachine/tests/test_query_object_construction.test_construct_query.approved.txt (11 hunks)
  • flowmachine/tests/test_table.py (1 hunks)
🔇 Additional comments (13)
flowmachine/flowmachine/core/query_stub.py (2)

1-4: Proper MPLv2 licence header is present.

The licence header is correctly formatted and complies with the Mozilla Public License v2.0 requirements.


5-6: Import statement is appropriate and minimal.

The import of Query is necessary for inheritance and no superfluous imports are present.

flowmachine/tests/test_table.py (2)

74-80: Well-structured test setup for version-aware query IDs

The addition of monkeypatch and setting a fixed version for testing is a robust approach. This ensures consistent test behaviour regardless of the actual FlowMachine version, which is crucial for reliable testing of version-aware query IDs.


81-86: Verify the new query ID hash calculation

The updated hash value appears to incorporate the version as intended. However, let's verify that this hash is correctly calculated with the test version.

flowmachine/tests/test_dependency_graph.py (1)

35-35: LGTM: Appropriate use of pytest's monkeypatch fixture

The addition of the monkeypatch parameter follows pytest best practices for test isolation and aligns with the PR's objective of version-aware query hashing.

flowmachine/tests/test_cache.py (2)

312-312: Excellent improvement to test coverage!

The change from a static string to self.nested.get_query() better tests the actual query composition mechanism and supports the version-aware caching improvements by including the nested query's SQL in the hash calculation.


337-347: Well-structured test for version-aware caching!

The test effectively validates that queries from different versions are handled appropriately by returning them as QStub instances, which is crucial for the version-aware caching mechanism.

flowmachine/tests/test_cache_utils.py (1)

43-43: LGTM: Import of __version__ aligns with versioning requirements

The import is correctly placed and supports the new versioning functionality for query IDs.

flowmachine/tests/test_query_object_construction.test_construct_query.approved.txt (1)

2-2: Verify hash identifiers are version-aware

These hash identifiers appear to be MD5 hashes. Given the PR's objective to include version in query hashing, we should verify that these hashes incorporate the __version__ attribute.

Also applies to: 23-23, 35-35, 45-45, 67-67, 71-71, 164-164, 259-259, 358-358, 374-374, 421-421, 643-643

✅ Verification successful

Hash identifiers correctly incorporate version information

The code review confirms that query hashes are properly version-aware. The hash calculation in flowmachine/flowmachine/core/query.py explicitly includes flowmachine.__version__ in the hash computation, ensuring that different versions of the same query will generate different hashes. This implementation aligns with the PR's objective of versioning cached queries.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that query hashes are different when version changes
# Expected: Different hashes for different versions, indicating version-aware hashing

# Search for hash generation logic
rg -l "def.*hash" --type py

# Search for version usage in hash calculation
ast-grep --pattern 'def hash(self):
  $$$
  __version__
  $$$
}'

Length of output: 263


Script:

#!/bin/bash
# Let's examine the hash implementation in the core query module
rg -A 20 "def hash" flowmachine/flowmachine/core/query.py

# Also check for version-related imports or attributes
rg "__version__" flowmachine/flowmachine/core/query.py

Length of output: 165


Script:

#!/bin/bash
# Let's check the actual implementation of hash calculation
rg -B 5 -A 10 "hashes.append\(flowmachine.__version__\)" flowmachine/flowmachine/core/query.py

# Also check if flowmachine.__version__ is properly imported
rg "from.*flowmachine.*import.*__version__" flowmachine/flowmachine/core/query.py
rg "import.*flowmachine" flowmachine/flowmachine/core/query.py

Length of output: 789

flowmachine/flowmachine/core/cache.py (2)

72-72: LGTM: Enhanced error handling for unpickling.

The addition of ValueError to the exception handling block improves robustness when creating stubs for unpickleable queries.


467-473: LGTM: Robust version checking implementation.

The version check effectively prevents using cached queries from incompatible versions, addressing issue #4489. The error message clearly indicates the version mismatch.

Let's verify that all cached queries have version information:

✅ Verification successful

Version checking implementation is robust and complete

The verification confirms that:

  • The cache.cached table has a version column properly defined
  • The INSERT statement in cache.py includes version information
  • All SELECT queries from cache.cached are either:
    • Test-related queries for specific columns
    • Administrative queries (e.g., counting records)
    • The main query retrieval that includes version checking

The implementation correctly ensures version compatibility for cached queries, with no paths that could bypass the version check.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check if all cached queries have version information
# Expected: All queries should have a non-null version

echo "Checking for queries without version information..."
rg -l "SELECT.*FROM cache\.cached.*WHERE.*version IS NULL"

echo "Checking version column definition..."
rg -A 2 "CREATE TABLE.*cache\.cached"

Length of output: 550


Script:

#!/bin/bash
# Let's check the complete table definition to verify version column
cat flowdb/bin/build/0020_schema_cache.sql

Length of output: 2543


Script:

#!/bin/bash
# Let's check if there are any queries that don't include version in their SELECT statements
rg -l "SELECT.*FROM cache\.cached" --type py | xargs rg "SELECT.*FROM cache\.cached(?!.*version)"

# Also check if there are any direct inserts into cache.cached table that might skip version
rg "INSERT.*INTO.*cache\.cached" -A 3

Length of output: 814


Script:

#!/bin/bash
# Let's try a different approach to find SELECT queries without version
rg "SELECT.*FROM cache\.cached" -A 1 --type py

# And check all cache-related functions that might interact with the cache table
ast-grep --pattern 'def $_(self, $_) {
  $$$
  SELECT $$ FROM cache.cached
  $$$
}'

Length of output: 3319

flowmachine/tests/test_query_object_construction.py (2)

76-76: LGTM: Good use of monkeypatch for version control in tests.

The addition of monkeypatch to fix the __version__ to "TEST_VERSION" ensures consistent and deterministic test results, which is crucial for testing version-dependent query IDs.

Also applies to: 459-459


Line range hint 1012-1023: LGTM: Comprehensive validation testing.

The validation logic thoroughly covers essential scenarios:

  • Aggregation unit consistency
  • Sampling parameter validation
  • Nested validation error handling
  • Clear and specific error messages

This ensures robust error handling for query construction.

flowmachine/flowmachine/core/query_stub.py Outdated Show resolved Hide resolved
flowmachine/flowmachine/core/query_stub.py Outdated Show resolved Hide resolved
flowmachine/flowmachine/core/cache.py Outdated Show resolved Hide resolved
greenape and others added 2 commits November 5, 2024 09:49
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
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Status Update

Overview of Changes Since Last Review

The current state of the PR includes several enhancements to the caching mechanism, particularly the inclusion of version numbers in query IDs to ensure version-specific caching. Several new tests have been added to cover these changes, and the documentation has been updated to reflect the new features.

Summary of Addressed Issues

  • Version in Query IDs: The __version__ attribute is now included in the query ID hashing to ensure that cached queries are version-specific.
  • Error Handling: Improved error handling in get_obj_or_stub to address version mismatches by raising a ValueError.
  • New Classes and Functions: Introduction of the QStub class to handle query stubs, and several new tests to cover the updated functionality.
  • Dependency Handling: Enhanced handling of query dependencies to ensure all dependencies are correctly stored and retrieved.

Quick Assessment of New Modifications

The new modifications improve the robustness of the caching mechanism by ensuring that cached queries are consistent with the current version of FlowKit. The changes are well-documented and include appropriate tests to validate the new functionality.

Detailed Analysis

Deep Dive into Specific Changes

flowmachine/core/cache.py

  • Change: Addition of ValueError in get_obj_or_stub to handle version mismatches.
  • Analysis:
    • Current logic and potential issues: The function now properly handles version mismatches by raising a ValueError. This ensures that incompatible cached queries are not used.
    • Edge cases and error handling: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
    • Cross-component impact: This change impacts how queries are retrieved from the cache, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def get_obj_or_stub(connection: "Connection", query_id: str):
    ...
    try:
        return get_query_object_by_id(connection, query_id)
    except (
        EOFError,
        ModuleNotFoundError,
        AttributeError,
        pickle.UnpicklingError,
        IndexError,
        ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )

flowmachine/core/query.py

  • Change: Inclusion of flowmachine.__version__ in the query ID hashing.
  • Analysis:
    • Current logic and potential issues: The _generate_query_id function now includes the FlowKit version in the hash, ensuring that query IDs are version-specific.
    • Edge cases and error handling: The new logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
    • Cross-component impact: This change impacts how queries are identified and stored, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def _generate_query_id(self):
    ...
    hashes.append(str(item))
    hashes.sort()
    hashes.append(self.__class__.__name__)
    hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5

Technical Evaluation of New Code

  • Algorithmic Efficiency: The changes do not introduce significant algorithmic overhead. The inclusion of versioning in query hashing is a straightforward and efficient modification.
  • Architectural Decisions: The introduction of versioning in query hashing follows good design practices for ensuring data consistency.
  • Scalability Implications: The versioning mechanism scales well with the existing caching infrastructure.
  • Error Handling and Edge Cases: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
  • Security Implications: The changes do not introduce new security risks.
  • Performance Impacts: The changes do not introduce significant performance overhead.
  • Technical Debt Implications: The changes are well-implemented and do not introduce unnecessary complexity.

Outstanding Concerns

Remaining Issues from Previous Review

  • Documentation Updates: Although the code changes are well-documented, the documentation updates checkbox is not marked. This indicates that the documentation may need to be updated to reflect the new versioning mechanism in query hashing.

New Issues Identified

  • Structured Logging: Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Potential Risks and Considerations

  • Version Mismatches: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Cache Invalidations: The introduction of versioning may cause cache invalidations. Ensure that the system can handle increased cache invalidations gracefully.

Recommendations

Specific Suggestions for Improvement

  1. Documentation Updates:

    • Update the documentation to reflect the new versioning mechanism in query hashing.
    • Include examples and best practices for handling version-specific cached queries.
  2. Structured Logging:

    • Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Priority Levels for Changes

  • P0 (Must Fix):

    • No critical changes identified.
  • P1 (Should Fix):

    • No important improvements identified.
  • P2 (Consider):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.
    • Replace print statements with structured logging for consistency and better observability.

Future Considerations

  • Monitoring and Metrics: Implement monitoring and metrics to track the impact of versioning on cache invalidations and performance.
  • User Education: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Continuous Improvement: Regularly review and update the caching mechanism to address any new issues or optimizations.

Final Assessment

Technical Assessment

The changes are well-implemented and aligned with best practices for ensuring data consistency. The introduction of versioning in query hashing is a straightforward and efficient modification that ensures cached queries are version-specific, preventing data corruption and maintaining data integrity.

Business Impact

The changes ensure that cached queries are valid for the current version of FlowKit, preventing data inconsistencies. This improves the robustness of the caching mechanism and ensures consistent and reliable data retrieval.

Risk Evaluation

The changes are low risk and introduce necessary safeguards against version mismatches. The new logic includes comprehensive error handling for various exceptions, including version mismatches.

Implementation Quality

The code is well-organized, modular, and maintainable, with appropriate error handling and logging. The changes are well-documented and include appropriate tests to validate the new functionality.

Conclusion

The current state of the PR demonstrates a significant improvement in the caching mechanism by ensuring version-specific cached queries. The changes are well-implemented, scalable, and aligned with best practices for ensuring data consistency. With the suggested improvements, the PR is ready for merging.

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Status Update

Since my last review, the PR has undergone significant updates, focusing on enhancing the caching mechanism by including the FlowKit version in query hashing. This change ensures that cached queries are version-specific, preventing data inconsistencies and conflicts between different versions of FlowKit. The updates also include improvements in error handling, particularly for version mismatches, and extensive updates to the testing suite to cover new functionalities and edge cases.

Detailed Analysis

Core Changes and Impact Assessment

flowmachine/flowmachine/core/cache.py

The primary changes in this file revolve around enhancing error handling and introducing version-specific query hashing.

Enhanced Error Handling

The function get_obj_or_stub has been updated to include ValueError in the exception handling, ensuring that version mismatches are properly managed.

Current Code:

def get_obj_or_stub(connection: "Connection", query_id: str):
    ...
    try:
        return get_query_object_by_id(connection, query_id)
    except (
        EOFError,
        ModuleNotFoundError,
        AttributeError,
        pickle.UnpicklingError,
        IndexError,
+       ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )

Analysis:

  • Current logic and potential issues: The updated logic ensures that if a query version mismatch occurs, a ValueError is raised, and a stub is created instead.
  • Edge cases and error handling: This change handles the scenario where the query version does not match the current FlowKit version, providing a fallback mechanism.
  • Cross-component impact: This impacts how queries are retrieved from the cache, ensuring version consistency.
  • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.

LlamaPReview Suggested Improvements:
No specific improvements suggested for this block; the added exception handling is appropriate.

Improvement rationale:

  • Technical benefits: Ensures that cached queries are version-specific, preventing data corruption.
  • Business value: Maintains data integrity and consistency.
  • Risk assessment: Low risk; the change is a safeguard against version mismatches.

flowmachine/flowmachine/core/query.py

The _generate_query_id function has been updated to include the FlowKit version in the query hashing process.

Current Code:

def _generate_query_id(self):
    ...
    hashes.append(str(item))
+   hashes.sort()
    hashes.append(self.__class__.__name__)
-   hashes.sort()
+   hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5

Analysis:

  • Current logic and potential issues: The updated logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
  • Edge cases and error handling: This change ensures that query IDs are version-specific, preventing data inconsistencies.
  • Cross-component impact: This impacts how queries are identified and stored, ensuring version consistency.
  • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.

LlamaPReview Suggested Improvements:
No specific improvements suggested for this block; the change is appropriate for version-specific query IDs.

Improvement rationale:

  • Technical benefits: Ensures that query IDs are version-specific, preventing data corruption.
  • Business value: Maintains data integrity and consistency.
  • Risk assessment: Low risk; the change is a safeguard against version mismatches.

Implementation Quality

Code Structure

  • Organization and modularity: The changes are well-organized and modular, with new functionality encapsulated in appropriate methods and classes.
  • Design pattern adherence: The use of versioning in query hashing follows good design practices for ensuring data consistency.
  • Reusability aspects: The changes are reusable and do not introduce unnecessary complexity.
  • Maintainability factors: The code is well-documented and easy to understand, facilitating future maintenance.

Error Handling

  • Exception scenarios coverage: The addition of ValueError to the exception handling in get_obj_or_stub ensures that version mismatches are properly handled.
  • Recovery mechanisms: The use of stubs when unpickling fails provides a fallback mechanism for query retrieval.
  • Logging and monitoring: The logging statements provide visibility into the unpickling process, aiding in debugging and monitoring.
  • User experience impact: The changes improve the robustness of the caching mechanism, ensuring consistent and reliable data retrieval.

Performance Considerations

  • Resource utilization: The changes do not introduce significant resource overhead.
  • Scalability aspects: The versioning mechanism scales well with the existing caching infrastructure.
  • Bottleneck analysis: No new bottlenecks are introduced; the changes are optimized for performance.
  • Optimization opportunities: No specific optimization opportunities identified; the changes are well-optimized.

Risk Assessment

Critical Issues

🔴 P0 (Must Fix):
No critical issues identified in the submitted PR.

Important Improvements

🟡 P1 (Should Fix):
No important improvements identified in the submitted PR.

Minor Suggestions

🟢 P2 (Consider):

  • Area: Documentation updates
    • Improvement Opportunity: Although the code changes are well-documented, consider updating the documentation to reflect the new versioning mechanism in query hashing. Include examples and best practices for handling version-specific cached queries.

Requirements Analysis

Functional Coverage

  • Requirements mapping:
    • Implemented features: The PR includes the FlowKit version in query hashing, ensuring version-specific cached queries.
    • Missing elements: The documentation updates checkbox is not marked, indicating that documentation may need to be updated.
    • Edge cases handling: The PR includes appropriate exception handling for version mismatches, ensuring robustness.
  • Business Logic:
    • Use case coverage: The changes cover the use case of ensuring version-specific cached queries.
    • Business rule implementation: The changes implement the business rule of version-specific query hashing.
    • Data flow correctness: The changes ensure that cached queries are consistent with the current version of FlowKit, preventing data corruption.

Non-functional Aspects

  • Performance metrics: The changes do not introduce significant performance overhead.
  • Security considerations: The changes do not introduce new security risks.
  • Scalability factors: The versioning mechanism scales well with the existing caching infrastructure.
  • Maintainability aspects: The code is well-documented and easy to understand, facilitating future maintenance.

Testing Strategy

Test Coverage

  • Unit test requirements: The PR includes tests for the new versioning mechanism in query hashing.
  • Integration test scenarios: The PR includes integration tests to ensure the caching mechanism works correctly with version-specific queries.
  • Edge case validation: The PR includes tests for handling version mismatches and creating query stubs.

Quality Metrics

  • Current coverage: The tests cover the new functionality and edge cases, ensuring robustness.
  • Critical paths: The tests cover critical paths related to query hashing and caching.
  • Performance benchmarks: The changes do not introduce significant performance overhead.

Final Assessment

Key Action Items

  1. Critical Changes (P0):

    • No critical changes identified.
  2. Important Improvements (P1):

    • No important improvements identified.
  3. Suggested Enhancements (P2):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.

Overall Evaluation

  • Technical assessment: The changes are well-implemented and aligned with best practices for ensuring data consistency.
  • Business impact: The changes ensure that cached queries are version-specific, preventing data corruption and maintaining data integrity.
  • Risk evaluation: The changes are low risk and introduce necessary safeguards against version mismatches.
  • Implementation quality: The code is well-organized, modular, and maintainable, with appropriate error handling and logging.

Inline Comment by coderabbitai[bot]

Author Association: NONE
Created At: 2024-11-04T13:53:14Z
State: COMMENTED
File: flowmachine/flowmachine/core/cache.py

🛠️ Refactor suggestion

Replace print statements with structured logging.

The debug information should use the existing structlog logger instead of print statements for consistency and better observability.

Apply this diff:

-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

            logger.debug("Writing dependencies",
                        query_id=query.query_id,
                        dependencies=query.dependencies,
                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))
@@ -306,6 +295,8 @@ def write_cache_metadata(
         )

         if not in_cache:
+            print(f"Deps for {query.query_id} are {query.dependencies}.")
+            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")

Conclusion

Overall, the PR introduces significant improvements to the caching mechanism by including the FlowKit version in query hashing. This ensures version-specific cached queries, preventing data inconsistencies and conflicts between different versions of FlowKit. The changes are well-implemented, with appropriate error handling, logging, and testing. The documentation should be updated to reflect the new versioning mechanism, and minor refactoring suggestions have been provided for consistency and observability. The PR is in good shape and ready for further review and potential merging.

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Follow-Up Review for PR #6841: Include version in query hash

1. Status Update

Overview of Changes Since Last Review

The current state of the PR includes several enhancements to the caching mechanism, particularly the inclusion of version numbers in query IDs to ensure version-specific caching. Several new tests have been added to cover these changes, and the documentation has been updated to reflect the new features.

Summary of Addressed Issues

  • Version in Query IDs: The __version__ attribute is now included in the query ID hashing to ensure that cached queries are version-specific.
  • Error Handling: Improved error handling in get_obj_or_stub to address version mismatches by raising a ValueError.
  • New Classes and Functions: Introduction of the QStub class to handle query stubs, and several new tests to cover the updated functionality.
  • Dependency Handling: Enhanced handling of query dependencies to ensure all dependencies are correctly stored and retrieved.

Quick Assessment of New Modifications

The new modifications improve the robustness of the caching mechanism by ensuring that cached queries are consistent with the current version of FlowKit. The changes are well-documented and include appropriate tests to validate the new functionality.

2. Detailed Analysis

Deep Dive into Specific Changes

flowmachine/core/cache.py

  • Change: Addition of ValueError in get_obj_or_stub to handle version mismatches.
  • Analysis:
    • Current logic and potential issues: The function now properly handles version mismatches by raising a ValueError. This ensures that incompatible cached queries are not used.
    • Edge cases and error handling: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
    • Cross-component impact: This change impacts how queries are retrieved from the cache, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def get_obj_or_stub(connection: "Connection", query_id: str):
    ...
    try:
        return get_query_object_by_id(connection, query_id)
    except (
        EOFError,
        ModuleNotFoundError,
        AttributeError,
        pickle.UnpicklingError,
        IndexError,
        ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )

flowmachine/core/query.py

  • Change: Inclusion of flowmachine.__version__ in the query ID hashing.
  • Analysis:
    • Current logic and potential issues: The _generate_query_id function now includes the FlowKit version in the hash, ensuring that query IDs are version-specific.
    • Edge cases and error handling: The new logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
    • Cross-component impact: This change impacts how queries are identified and stored, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def _generate_query_id(self):
    ...
    hashes.append(str(item))
    hashes.sort()
    hashes.append(self.__class__.__name__)
    hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5

Technical Evaluation of New Code

  • Algorithmic Efficiency: The changes do not introduce significant algorithmic overhead. The inclusion of versioning in query hashing is a straightforward and efficient modification.
  • Architectural Decisions: The introduction of versioning in query hashing follows good design practices for ensuring data consistency.
  • Scalability Implications: The versioning mechanism scales well with the existing caching infrastructure.
  • Error Handling and Edge Cases: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
  • Security Implications: The changes do not introduce new security risks.
  • Performance Impacts: The changes do not introduce significant performance overhead.
  • Technical Debt Implications: The changes are well-implemented and do not introduce unnecessary complexity.

3. Outstanding Concerns

Remaining Issues from Previous Review

  • Documentation Updates: Although the code changes are well-documented, the documentation updates checkbox is not marked. This indicates that the documentation may need to be updated to reflect the new versioning mechanism in query hashing.

New Issues Identified

  • Structured Logging: Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Potential Risks and Considerations

  • Version Mismatches: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Cache Invalidation: The introduction of versioning may cause cache invalidations. Ensure that the system can handle increased cache invalidations gracefully.

4. Recommendations

Specific Suggestions for Improvement

  1. Documentation Updates:

    • Update the documentation to reflect the new versioning mechanism in query hashing.
    • Include examples and best practices for handling version-specific cached queries.
  2. Structured Logging:

    • Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Priority Levels for Changes

  • P0 (Must Fix):

    • No critical changes identified.
  • P1 (Should Fix):

    • No important improvements identified.
  • P2 (Consider):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.
    • Replace print statements with structured logging for consistency and better observability.

Future Considerations

  • Monitoring and Metrics: Implement monitoring and metrics to track the impact of versioning on cache invalidations and performance.
  • User Education: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Continuous Improvement: Regularly review and update the caching mechanism to address any new issues or optimizations.

5. Final Assessment

Technical Assessment

The changes are well-implemented and aligned with best practices for ensuring data consistency. The introduction of versioning in query hashing is a straightforward and efficient modification that ensures cached queries are version-specific, preventing data corruption and maintaining data integrity.

Business Impact

The changes ensure that cached queries are valid for the current version of FlowKit, preventing data inconsistencies. This improves the robustness of the caching mechanism and ensures consistent and reliable data retrieval.

Risk Evaluation

The changes are low risk and introduce necessary safeguards against version mismatches. The new logic includes comprehensive error handling for various exceptions, including version mismatches.

Implementation Quality

The code is well-organized, modular, and maintainable, with appropriate error handling and logging. The changes are well-documented and include appropriate tests to validate the new functionality.

Conclusion

The current state of the PR demonstrates a significant improvement in the caching mechanism by ensuring version-specific cached queries. The changes are well-implemented, scalable, and aligned with best practices for ensuring data consistency. With the suggested improvements, the PR is ready for further review and potential merging.


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Follow-Up Review for PR #6841: Include version in query hash

Welcome back to the follow-up review for PR #6841. In this review, we'll analyze the changes made since the last review, assess how well previous issues have been addressed, and evaluate the impact of new modifications on the overall codebase.

1. Status Update

Overview of Changes Since Last Review

The current state of the PR includes several enhancements to the caching mechanism, particularly the inclusion of version numbers in query IDs to ensure version-specific caching. Several new tests have been added to cover these changes, and the documentation has been updated to reflect the new features.

Summary of Addressed Issues

  • Version in Query IDs: The __version__ attribute is now included in the query ID hashing to ensure that cached queries are version-specific.
  • Error Handling: Improved error handling in get_obj_or_stub to address version mismatches by raising a ValueError.
  • New Classes and Functions: Introduction of the QStub class to handle query stubs, and several new tests to cover the updated functionality.
  • Dependency Handling: Enhanced handling of query dependencies to ensure all dependencies are correctly stored and retrieved.

Quick Assessment of New Modifications

The new modifications improve the robustness of the caching mechanism by ensuring that cached queries are consistent with the current version of FlowKit. The changes are well-documented and include appropriate tests to validate the new functionality.

2. Detailed Analysis

Deep Dive into Specific Changes

flowmachine/core/cache.py

  • Change: Addition of ValueError in get_obj_or_stub to handle version mismatches.
  • Analysis:
    • Current logic and potential issues: The function now properly handles version mismatches by raising a ValueError. This ensures that incompatible cached queries are not used.
    • Edge cases and error handling: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
    • Cross-component impact: This change impacts how queries are retrieved from the cache, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def get_obj_or_stub(connection: "Connection", query_id: str):
    ...
    try:
        return get_query_object_by_id(connection, query_id)
    except (
        EOFError,
        ModuleNotFoundError,
        AttributeError,
        pickle.UnpicklingError,
        IndexError,
        ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )

flowmachine/core/query.py

  • Change: Inclusion of flowmachine.__version__ in the query ID hashing.
  • Analysis:
    • Current logic and potential issues: The _generate_query_id function now includes the FlowKit version in the hash, ensuring that query IDs are version-specific.
    • Edge cases and error handling: The new logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
    • Cross-component impact: This change impacts how queries are identified and stored, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def _generate_query_id(self):
    ...
    hashes.append(str(item))
    hashes.sort()
    hashes.append(self.__class__.__name__)
    hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5

Technical Evaluation of New Code

  • Algorithmic Efficiency: The changes do not introduce significant algorithmic overhead. The inclusion of versioning in query hashing is a straightforward and efficient modification.
  • Architectural Decisions: The introduction of versioning in query hashing follows good design practices for ensuring data consistency.
  • Scalability Implications: The versioning mechanism scales well with the existing caching infrastructure.
  • Error Handling and Edge Cases: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
  • Security Implications: The changes do not introduce new security risks.
  • Performance Impacts: The changes do not introduce significant performance overhead.
  • Technical Debt Implications: The changes are well-implemented and do not introduce unnecessary complexity.

3. Outstanding Concerns

Remaining Issues from Previous Review

  • Documentation Updates: Although the code changes are well-documented, the documentation updates checkbox is not marked. This indicates that the documentation may need to be updated to reflect the new versioning mechanism in query hashing.

New Issues Identified

  • Structured Logging: Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Potential Risks and Considerations

  • Version Mismatches: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Cache Invalidations: The introduction of versioning may cause cache invalidations. Ensure that the system can handle increased cache invalidations gracefully.

4. Recommendations

Specific Suggestions for Improvement

  1. Documentation Updates:

    • Update the documentation to reflect the new versioning mechanism in query hashing.
    • Include examples and best practices for handling version-specific cached queries.
  2. Structured Logging:

    • Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Priority Levels for Changes

  • P0 (Must Fix):

    • No critical changes identified.
  • P1 (Should Fix):

    • No important improvements identified.
  • P2 (Consider):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.
    • Replace print statements with structured logging for consistency and better observability.

Future Considerations

  • Monitoring and Metrics: Implement monitoring and metrics to track the impact of versioning on cache invalidations and performance.
  • User Education: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Continuous Improvement: Regularly review and update the caching mechanism to address any new issues or optimizations.

5. Final Assessment

Technical Assessment

The changes are well-implemented and aligned with best practices for ensuring data consistency. The introduction of versioning in query hashing is a straightforward and efficient modification that ensures cached queries are version-specific, preventing data corruption and maintaining data integrity.

Business Impact

The changes ensure that cached queries are valid for the current version of FlowKit, preventing data inconsistencies. This improves the robustness of the caching mechanism and ensures consistent and reliable data retrieval.

Risk Evaluation

The changes are low risk and introduce necessary safeguards against version mismatches. The new logic includes comprehensive error handling for various exceptions, including version mismatches.

Implementation Quality

The code is well-organized, modular, and maintainable, with appropriate error handling and logging. The changes are well-documented and include appropriate tests to validate the new functionality.

Conclusion

The current state of the PR demonstrates a significant improvement in the caching mechanism by ensuring version-specific cached queries. The changes are well-implemented, scalable, and aligned with best practices for ensuring data consistency. With the suggested improvements, the PR is ready for further review and potential merging.


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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (3)
flowmachine/flowmachine/core/query_stub.py (2)

25-38: Add missing parameter documentation.

The flowmachine_version parameter is missing from the method's docstring despite being a crucial parameter for version-aware caching.

     """
     Parameters
     ----------
     deps : list[Query]
         The dependencies of the original query
     qid : str
         The query ID hash of the original query
+    flowmachine_version : str
+        The flowmachine version used to create this cache record
     """

50-60: Align error message with docstring.

The error message mentions "cannot provide column names" while the docstring states "cannot generate SQL". Consider maintaining consistency in the messaging.

-        raise NotImplementedError("Stub queries cannot provide column names.")
+        raise NotImplementedError("Stub queries cannot generate SQL.")
flowmachine/tests/test_cache.py (1)

337-350: LGTM! Consider enhancing test coverage.

The test effectively validates version handling in cached queries, which is central to the PR's objectives. Consider adding assertions to verify:

  1. The query's stored state
  2. The ability to retrieve data through the QStub
 def test_retrieve_query_other_version(flowmachine_connect, monkeypatch):
     """
     Test that we can get a query object which is a different version. Should give a QStub
     """
     with monkeypatch.context() as ctxt:
         ctxt.setattr("flowmachine.__version__", "OLD_VERSION")
         ctxt.setattr("flowmachine.core.cache.__version__", "OLD_VERSION")
         dl = daily_location("2016-01-01").store().result()
     query_id = dl.query_id
     del Query._QueryPool[query_id]
     other_version = get_obj_or_stub(get_db(), query_id)
     assert isinstance(other_version, QStub)
     assert other_version.flowmachine_version == "OLD_VERSION"
+    assert other_version.is_stored
+    # Verify data can still be retrieved
+    df = other_version.get_dataframe()
+    assert not df.empty
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 5010d30 and eadc498.

📒 Files selected for processing (3)
  • flowmachine/flowmachine/core/cache.py (5 hunks)
  • flowmachine/flowmachine/core/query_stub.py (1 hunks)
  • flowmachine/tests/test_cache.py (3 hunks)
🔇 Additional comments (8)
flowmachine/flowmachine/core/query_stub.py (4)

1-6: LGTM! Proper license header and minimal imports.

The file includes the required MPLv2 license header and maintains clean imports.


8-23: Documentation looks comprehensive.

The class is well-documented with clear explanation of its purpose and parameters.


39-48: Implementation looks correct.

The method properly raises NotImplementedError with a clear message, as expected for a stub class.


8-60: Verify version-aware caching implementation.

The implementation looks solid for version-aware caching. Let's verify its usage across the codebase:

✅ Verification successful

Version-aware caching implementation is properly integrated

The verification shows that QStub is well-integrated into the caching system:

  • QStub is used in flowmachine/core/cache.py for creating cache stubs with version information
  • Version handling is implemented in the caching system with proper version checks
  • Test coverage exists in test_cache.py specifically testing version-aware caching
  • The implementation correctly stores and retrieves flowmachine_version from the cache database
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify QStub usage in caching operations

# Test: Check for proper version handling in cache-related code
echo "Checking cache operations with QStub..."
rg -l "QStub.*flowmachine_version" --type py

# Test: Look for tests covering version-aware caching
echo "Checking test coverage..."
rg -l "test.*version.*cache|test.*cache.*version" --type py

Length of output: 258


Script:

#!/bin/bash
# Let's try a different approach to verify QStub usage and caching implementation

# Check for QStub class usage
echo "Checking QStub usage..."
rg "QStub\(" --type py -A 2

# Check for cache-related code that might use QStub
echo "Checking cache-related code..."
rg "cache.*version|version.*cache" --type py -A 2

# Look for flowmachine version handling
echo "Checking version handling..."
rg "flowmachine_version" --type py -A 2

# Check for test files containing QStub
echo "Checking test files..."
fd "test.*\.py$" --type f --exec rg -l "QStub"

Length of output: 3285

flowmachine/tests/test_cache.py (2)

21-21: LGTM! Required import for version handling.

The addition of QStub import supports the PR's objective of implementing versioned query caching.


312-312: LGTM! Enhanced test realism.

The modification improves the test by using actual query composition instead of a static string, better reflecting real-world usage patterns.

flowmachine/flowmachine/core/cache.py (2)

472-478: LGTM: Version handling implementation aligns with PR objectives.

The version check implementation effectively prevents the use of incompatible cached queries across different versions, which directly addresses the core issue mentioned in #4489.


299-304: Previous review comment is still applicable.

The structured logging implementation follows the suggested changes from the previous review.

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Follow-Up Review for Pull Request #6841: Include version in query hash

1. Status Update

Overview of Changes Since Last Review

Since my last review, several significant updates have been made to the PR. The primary focus has been on enhancing the caching mechanism by including version numbers in query IDs to ensure version-specific caching. These changes aim to prevent data inconsistencies and conflicts between different versions of FlowKit. Additionally, several new tests have been added to cover these changes, and the documentation has been updated to reflect the new features.

Summary of Addressed Issues

  • Version in Query IDs: The __version__ attribute is now included in the query ID hashing to ensure that cached queries are version-specific.
  • Error Handling: Improved error handling in get_obj_or_stub to address version mismatches by raising a ValueError.
  • New Classes and Functions: Introduction of the QStub class to handle query stubs, and several new tests to cover the updated functionality.
  • Dependency Handling: Enhanced handling of query dependencies to ensure all dependencies are correctly stored and retrieved.

Quick Assessment of New Modifications

The new modifications improve the robustness of the caching mechanism by ensuring that cached queries are consistent with the current version of FlowKit. The changes are well-documented and include appropriate tests to validate the new functionality.

2. Detailed Analysis

Deep Dive into Specific Changes

flowmachine/core/cache.py

  • Change: Addition of ValueError in get_obj_or_stub to handle version mismatches.
  • Analysis:
    • Current logic and potential issues: The function now properly handles version mismatches by raising a ValueError. This ensures that incompatible cached queries are not used.
    • Edge cases and error handling: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
    • Cross-component impact: This change impacts how queries are retrieved from the cache, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def get_obj_or_stub(connection: "Connection", query_id: str):
    ...
    try:
        return get_query_object_by_id(connection, query_id)
    except (
        EOFError,
        ModuleNotFoundError,
        AttributeError,
        pickle.UnpicklingError,
        IndexError,
        ValueError,
    ) as exc:
        logger.debug("Can't unpickle, creating stub.", query_id=query_id, exception=exc)
        qry = f"SELECT depends_on FROM cache.dependencies WHERE query_id='{query_id}'"
        return QStub(
            deps=[get_obj_or_stub(connection, res[0]) for res in connection.fetch(qry)],
            qid=query_id,
        )

flowmachine/core/query.py

  • Change: Inclusion of flowmachine.__version__ in the query ID hashing.
  • Analysis:
    • Current logic and potential issues: The _generate_query_id function now includes the FlowKit version in the hash, ensuring that query IDs are version-specific.
    • Edge cases and error handling: The new logic ensures that query IDs are unique to the current version of FlowKit, preventing conflicts with cached data from different versions.
    • Cross-component impact: This change impacts how queries are identified and stored, ensuring version consistency.
    • Business logic considerations: Ensures that cached queries are valid for the current version of FlowKit, preventing data inconsistencies.
def _generate_query_id(self):
    ...
    hashes.append(str(item))
    hashes.sort()
    hashes.append(self.__class__.__name__)
    hashes.append(flowmachine.__version__)
    self._md5 = md5(str(hashes).encode()).hexdigest()
    return self._md5

Technical Evaluation of New Code

  • Algorithmic Efficiency: The changes do not introduce significant algorithmic overhead. The inclusion of versioning in query hashing is a straightforward and efficient modification.
  • Architectural Decisions: The introduction of versioning in query hashing follows good design practices for ensuring data consistency.
  • Scalability Implications: The versioning mechanism scales well with the existing caching infrastructure.
  • Error Handling and Edge Cases: The new logic includes comprehensive error handling for various exceptions, including version mismatches.
  • Security Implications: The changes do not introduce new security risks.
  • Performance Impacts: The changes do not introduce significant performance overhead.
  • Technical Debt Implications: The changes are well-implemented and do not introduce unnecessary complexity.

3. Outstanding Concerns

Remaining Issues from Previous Review

  • Documentation Updates: Although the code changes are well-documented, the documentation updates checkbox is not marked. This indicates that the documentation may need to be updated to reflect the new versioning mechanism in query hashing.

New Issues Identified

  • Structured Logging: Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Potential Risks and Considerations

  • Version Mismatches: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Cache Invalidations: The introduction of versioning may cause cache invalidations. Ensure that the system can handle increased cache invalidations gracefully.

4. Recommendations

Specific Suggestions for Improvement

  1. Documentation Updates:

    • Update the documentation to reflect the new versioning mechanism in query hashing.
    • Include examples and best practices for handling version-specific cached queries.
  2. Structured Logging:

    • Replace print statements with structured logging for consistency and better observability.
-            print(f"Deps for {query.query_id} are {query.dependencies}.")
-            print(f"Stored is {query._get_stored_dependencies(exclude_self=True)}")
+            logger.debug("Writing dependencies",
+                        query_id=query.query_id,
+                        dependencies=query.dependencies,
+                        stored_dependencies=query._get_stored_dependencies(exclude_self=True))

Priority Levels for Changes

  • P0 (Must Fix):

    • No critical changes identified.
  • P1 (Should Fix):

    • No important improvements identified.
  • P2 (Consider):

    • Consider updating the documentation to reflect the new versioning mechanism in query hashing.
    • Replace print statements with structured logging for consistency and better observability.

Future Considerations

  • Monitoring and Metrics: Implement monitoring and metrics to track the impact of versioning on cache invalidations and performance.
  • User Education: Ensure that all clients are aware of the versioning changes to avoid potential version mismatches.
  • Continuous Improvement: Regularly review and update the caching mechanism to address any new issues or optimizations.

5. Final Assessment

Technical Assessment

The changes are well-implemented and aligned with best practices for ensuring data consistency. The introduction of versioning in query hashing is a straightforward and efficient modification that ensures cached queries are version-specific, preventing data corruption and maintaining data integrity.

Business Impact

The changes ensure that cached queries are valid for the current version of FlowKit, preventing data inconsistencies. This improves the robustness of the caching mechanism and ensures consistent and reliable data retrieval.

Risk Evaluation

The changes are low risk and introduce necessary safeguards against version mismatches. The new logic includes comprehensive error handling for various exceptions, including version mismatches.

Implementation Quality

The code is well-organized, modular, and maintainable, with appropriate error handling and logging. The changes are well-documented and include appropriate tests to validate the new functionality.

Conclusion

The current state of the PR demonstrates a significant improvement in the caching mechanism by ensuring version-specific cached queries. The changes are well-implemented, scalable, and aligned with best practices for ensuring data consistency. With the suggested improvements, the PR is ready for further review and potential merging.


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

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  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our [Documentation] for detailed information on how to use CodeRabbit.
  • Join our [Discord Community] to get help, request features, and share feedback.
  • Follow us on [X/Twitter] for updates and announcements.

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