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Fix to_checksums with None values in dicts and recursion
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Having a `'src': None` entry in a dict for checksums is as valid as
having a `None` entry directly in the list. However the current function
didn't handle it and crashed.
Fix that as well as a few corner cases especially in the recursive case
by introducing a new function for handling checksum entries in the
checksum list and limiting the recursiveness.

Fixes easybuilders#4142
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Flamefire committed Jan 4, 2023
1 parent e784549 commit fa592fb
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Showing 2 changed files with 76 additions and 29 deletions.
53 changes: 28 additions & 25 deletions easybuild/framework/easyconfig/types.py
Original file line number Diff line number Diff line change
Expand Up @@ -467,33 +467,36 @@ def to_dependencies(dep_list):
return [to_dependency(dep) for dep in dep_list]


def _to_checksum(checksum, top_level=True, is_dict_value=False):
"""Ensure the correct element type for each checksum in the checksum list"""
# each entry can be:
# * None (indicates no checksum)
# * a string (MD5, SHA256, ... checksum)
# * a list or tuple with 2 elements: checksum type + checksum value
# * a list or tuple of checksums (i.e. multiple checksums for a single file)
# * a dict (filename to checksum mapping)
if checksum is None or isinstance(checksum, string_type):
return checksum
elif isinstance(checksum, (list, tuple)):
if len(checksum) == 2 and isinstance(checksum[0], string_type) and isinstance(checksum[1], (string_type, int)):
# 2 elements => a checksum tuple (2nd element string or int) or 2 alternative checksums
return tuple(checksum)
elif top_level or is_dict_value:
# Alternative checksums, recurse if this is a list entry (i.e. top_level)
# or a dict entry (to support alternative checksums for each filename)
return tuple(_to_checksum(x, top_level=False) for x in checksum)
elif top_level and isinstance(checksum, dict):
return {key: _to_checksum(value, top_level=False, is_dict_value=True) for key, value in checksum.items()}
# Not returned -> Wrong type/format
raise ValueError('Unexpected type of "%s": %s' % (type(checksum), str(checksum)))


def to_checksums(checksums):
"""Ensure correct element types for list of checksums: convert list elements to tuples."""
res = []
for checksum in checksums:
# each list entry can be:
# * None (indicates no checksum)
# * a string (MD5 or SHA256 checksum)
# * a tuple with 2 elements: checksum type + checksum value
# * a list of checksums (i.e. multiple checksums for a single file)
# * a dict (filename to checksum mapping)
if isinstance(checksum, string_type):
res.append(checksum)
elif isinstance(checksum, (list, tuple)):
# 2 elements + only string/int values => a checksum tuple
if len(checksum) == 2 and all(isinstance(x, (string_type, int)) for x in checksum):
res.append(tuple(checksum))
else:
res.append(to_checksums(checksum))
elif isinstance(checksum, dict):
validated_dict = {}
for key, value in checksum.items():
validated_dict[key] = to_checksums(value)
res.append(validated_dict)
else:
res.append(checksum)

return res
try:
return [_to_checksum(checksum) for checksum in checksums]
except ValueError as e:
raise EasyBuildError('Invalid checksums: %s\n\tError: %s', checksums, e)


def ensure_iterable_license_specs(specs):
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52 changes: 48 additions & 4 deletions test/framework/type_checking.py
Original file line number Diff line number Diff line change
Expand Up @@ -709,16 +709,60 @@ def test_to_checksums(self):
test_inputs = [
['be662daa971a640e40be5c804d9d7d10'],
['be662daa971a640e40be5c804d9d7d10', ('md5', 'be662daa971a640e40be5c804d9d7d10')],
[['be662daa971a640e40be5c804d9d7d10', ('md5', 'be662daa971a640e40be5c804d9d7d10')]],
[('md5', 'be662daa971a640e40be5c804d9d7d10')],
['be662daa971a640e40be5c804d9d7d10', ('adler32', '0x998410035'), ('crc32', '0x1553842328'),
('md5', 'be662daa971a640e40be5c804d9d7d10'), ('sha1', 'f618096c52244539d0e89867405f573fdb0b55b0'),
('size', 273)],
[
'be662daa971a640e40be5c804d9d7d10',
('adler32', '0x998410035'),
('crc32', '0x1553842328'),
('md5', 'be662daa971a640e40be5c804d9d7d10'),
('sha1', 'f618096c52244539d0e89867405f573fdb0b55b0'),
('size', 273),
],
# None values should not be filtered out, but left in place
[None, 'fa618be8435447a017fd1bf2c7ae922d0428056cfc7449f7a8641edf76b48265', None],
# Alternative checksums
[('main_checksum', 'alternative_checksum')],
[('1st_of_3', '2nd_of_3', '3rd_of_3')],
# Alternative checksums with types
[
(('adler32', '1st_adler'), ('crc32', '1st_crc')),
(('adler32', '2nd_adler'), ('crc32', '2nd_crc'), ('sha1', '2nd_sha')),
],
# Entries can be dicts even containing `None`
[
'be662daa971a640e40be5c804d9d7d10',
{
'src-arm.tgz': 'be662daa971a640e40be5c804d9d7d10',
'src-x86.tgz': ('mainchecksum', 'altchecksum'),
'src-ppc.tgz': ('mainchecksum', ('md5', 'altchecksum')),
'git-clone.tgz': None,
},
],
]
for checksums in test_inputs:
self.assertEqual(to_checksums(checksums), checksums)
# List converted to tuple
checksums = [['1stchecksum', ('md5', 'md5sum')]]
checksums_expected = [tuple(checksums[0])]
self.assertEqual(to_checksums(checksums), checksums_expected)
# Error detection
wrong_nesting = [('1stchecksum', ('md5', ('md5sum', 'altmd5sum')))]
self.assertErrorRegex(EasyBuildError, 'Unexpected type.*md5', to_checksums, wrong_nesting)
correct_nesting = [('1stchecksum', ('md5', 'md5sum'), ('md5', 'altmd5sum'))]
self.assertEqual(to_checksums(correct_nesting), correct_nesting)

unexpected_set = [('1stchecksum', {'md5', 'md5sum'})]
self.assertErrorRegex(EasyBuildError, 'Unexpected type.*md5', to_checksums, unexpected_set)
unexpected_dict = [('1stchecksum', {'src': 'md5sum'})]
self.assertErrorRegex(EasyBuildError, 'Unexpected type.*md5', to_checksums, unexpected_dict)
unexpected_dict = [{'src': ('md5sum', {'src': 'shasum'})}]
self.assertErrorRegex(EasyBuildError, 'Unexpected type.*shasum', to_checksums, unexpected_dict)
correct_dict = [{'src': ('md5sum', 'shasum')}]
self.assertEqual(to_checksums(correct_dict), correct_dict)
correct_dict_1 = [{'src': [['md5', 'md5sum'], ['sha', 'shasum']]}]
correct_dict_2 = [{'src': (('md5', 'md5sum'), ('sha', 'shasum'))}]
self.assertEqual(to_checksums(correct_dict_2), correct_dict_2)
self.assertEqual(to_checksums(correct_dict_1), correct_dict_2) # Lists to tuples

def test_ensure_iterable_license_specs(self):
"""Test ensure_iterable_license_specs function."""
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