-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
It includes the following changes: -Fix linter warnings -Introduce conditional parameter validation logic for exomiser and vep -Remove exomiser test analysis file as default files seem to be compatible with public test dataset -Use a dedicated `exomiser_genome` parameter -Add utility functions to check if a tool is present and corresponding nf-test tests -Make Exomiser stub output files identical to real output files -Infer exomiser version from version file -Standardize exomizer process outputs -Introduce per sequencing type analysis file -use process input instead params to pass configuration information -Update README.md, OUTPUT.md and USAGE.md -Add REFERENCE_DATA.md -Modify postprocessing workflow code to use def keyword for local variables and use more standard variable names -Modify the github ci nf-test command: remove the local tag constraint (not necessary anymore) and activate ci mode -Add basic module test for exomiser (stub mode)
- Loading branch information
1 parent
58855f2
commit ae7818e
Showing
23 changed files
with
806 additions
and
332 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.