Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Some high resolution Julich Brain 2.9 maps on BigBrain are missing dois #69

Open
4 tasks done
AhmetNSimsek opened this issue Nov 7, 2024 · 1 comment
Open
4 tasks done
Assignees

Comments

@AhmetNSimsek
Copy link
Collaborator

AhmetNSimsek commented Nov 7, 2024

TO-DO:

  • find remaining datasets
  • create a siibra-chore transaction for updating the jsons
    • 0.4EOL on jugit
    • master on github

amygdala dataset: https://search.kg.ebrains.eu/instances/cb40a501-b155-4c2f-8df3-0ee7c5f1ed00

List of regions with no datasets connection:

AAA (anterior amygdaloid area) left
AAA (anterior amygdaloid area) right
AHid (amygdalohippocampal transition area, dorsal part) left
AHid (amygdalohippocampal transition area, dorsal part) right
AHiv (amygdalohippocampal transition area, ventral part) left
AHiv (amygdalohippocampal transition area, ventral part) right
APir (amygdalopiriform transition area) left
APir (amygdalopiriform transition area) right
AStr (amygdalostriatal transition zone) left
AStr (amygdalostriatal transition zone) right
Bl (basolateral nucleus) left
Bl (basolateral nucleus) right
Bm (basomedial nucleus) left
Bm (basomedial nucleus) right
Ce (central nucleus) left
Ce (central nucleus) right
ice (intermediate central fiber masses) left
ice (intermediate central fiber masses) right
icm (intermediate caudomedial fiber masses) left
icm (intermediate caudomedial fiber masses) right
iol (intermediate orolateral fiber masses) left
iol (intermediate orolateral fiber masses) right
La (lateral nucleus) left
La (lateral nucleus) right
ld (Lamella dorsalis) left
ld (Lamella dorsalis) right
lm (Lamella medialis) left
lm (Lamella medialis) right
Me (medial nucleus) left
Me (medial nucleus) right
Pl (paralaminar nucleus) left
Pl (paralaminar nucleus) right
VCod (ventral cortical nucleus, dorsal part) left
VCod (ventral cortical nucleus, dorsal part) right
VCov (ventral cortical nucleus, ventral part) left
VCov (ventral cortical nucleus, ventral part) right
MGBd (Metathalamus) left
MGBd (Metathalamus) right
MGBm (Metathalamus) left
MGBm (Metathalamus) right
MGBv (Metathalamus) left
MGBv (Metathalamus) right
Area IFJ1 (IFS,PreCS) left
Area IFJ1 (IFS,PreCS) right
Area IFJ2 (IFS,PreCS) left
Area IFJ2 (IFS,PreCS) right
Area IFS1 (IFS) left
Area IFS1 (IFS) right
Area IFS2 (IFS) left
Area IFS2 (IFS) right
Area IFS3 (IFS) left
Area IFS3 (IFS) right
Area IFS4 (IFS) left
CGL.lam1 (Metathalamus) left
CGL.lam1 (Metathalamus) right
CGL.lam2 (Metathalamus) left
CGL.lam2 (Metathalamus) right
CGL.lam3 (Metathalamus) left
CGL.lam3 (Metathalamus) right
CGL.lam4 (Metathalamus) left
CGL.lam4 (Metathalamus) right
CGL.lam5 (Metathalamus) left
CGL.lam5 (Metathalamus) right
CGL.lam6 (Metathalamus) left
CGL.lam6 (Metathalamus) right
MFG1 left
MFG1 right
MFG2 left
Area hPO1 (POS) right
SFS1 left
SFS1 right
SFS2 left
Area 6ma (preSMA, mesial SFG) right
Area 6mp (SMA, mesial SFG) left
Area STS2 (STS) right

@AhmetNSimsek
Copy link
Collaborator Author

As of 1763fa0, the list has shrunk to

Entorhinal Cortex left
Entorhinal Cortex right
Area IFJ1 (IFS,PreCS) left
Area IFJ1 (IFS,PreCS) right
Area IFJ2 (IFS,PreCS) left
Area IFJ2 (IFS,PreCS) right
Area IFS1 (IFS) left
Area IFS1 (IFS) right
Area IFS2 (IFS) left
Area IFS2 (IFS) right
Area IFS3 (IFS) left
Area IFS3 (IFS) right
Area IFS4 (IFS) left
Area IFS4 (IFS) right

The respective datasets seem to have not been released. Waiting response from the data owner.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants