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Some regions in Julich brain 1.18 mni152 statistical map is not reachable #26

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AhmetNSimsek opened this issue Apr 26, 2023 · 2 comments
Open

Some regions in Julich brain 1.18 mni152 statistical map is not reachable #26

AhmetNSimsek opened this issue Apr 26, 2023 · 2 comments
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data Issue with the data from the source. Requires data owner's input/action.

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@AhmetNSimsek
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AhmetNSimsek commented Apr 26, 2023 •
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Following regions cannot be fetched due to 404 from Julich brain 1.18 mni152 statistical map:

  • Area ifs4 (IFS) left
  • Area ifs4 (IFS) right
  • Area ifs1 (IFS) left
  • Area ifs1 (IFS) right
  • Area ifs2 (IFS) left
  • Area ifs2 (IFS) right
  • Area ifs3 (IFS) left
  • Area ifs3 (IFS) right
  • FIXED: Ventral Dentate Nucleus (Cerebellum) right

Since this is a SparseMap, the SparseIndex is calculated upon requesting any of the maps. But SparseIndex creation fails due to these regions and hence it fails to fetch any region. The PR FZJ-INM1-BDA/siibra-python#310 was suggested (the sparsemap class supports failures but parcellationmap.fetch fails the process) but this is a data issue.
@AhmetNSimsek
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@xgui3783, shall we contact Hartmut for this?

@AhmetNSimsek AhmetNSimsek mentioned this issue Apr 26, 2023
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@AhmetNSimsek AhmetNSimsek transferred this issue from FZJ-INM1-BDA/siibra-python Jan 24, 2024
@xgui3783 xgui3783 added the bug Something isn't working label Jan 24, 2024
@AhmetNSimsek AhmetNSimsek added data Issue with the data from the source. Requires data owner's input/action. and removed bug Something isn't working labels Feb 21, 2024
@AhmetNSimsek AhmetNSimsek mentioned this issue Feb 21, 2024
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@AhmetNSimsek
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Ventral Dentate Nucleus (Cerebellum) right is fixed with e088b67
But the others do not seem to be part of 1.18. See https://object.cscs.ch/v1/AUTH_227176556f3c4bb38df9feea4b91200c/hbp-d000001_jubrain-cytoatlas_pub/MPM-collections/18/jubrain-ontology_18.json

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