cron-update-kg-proxy.yml

name: '[cron] update KG proxy'

on:
  schedule:
    - cron: '5 4 * * 0' # every Sunday at 4am

env:
  EBRAINS_CCFLOW_CLIENT_ID: ${{ secrets.EBRAINS_OIDC_SIIBRA_CI_CLIENT_ID }}
  EBRAINS_CCFLOW_CLIENT_SECRET: ${{ secrets.EBRAINS_OIDC_SIIBRA_CI_CLIENT_SECRET }}

jobs:
  update:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        include:
        - artefacts-dir: "ebrainsquery/v3/AtlasAnnotation"
          query-id: "66c69c41-ad91-4915-ac23-897fd0c60211"

        - artefacts-dir: "ebrainsquery/v3/ParcellationEntity"
          query-id: "d236e213-c048-4331-bfd9-b45c60bc3d03"
          
        - artefacts-dir: "ebrainsquery/v3/ParcellationEntityVersion"
          query-id: "5e80bb84-68cf-4425-859b-5306f6838693"

        - artefacts-dir: "ebrainsquery/v3/CustomAnatomicalEntity"
          query-id: "d7cdc1d6-0aa5-498a-94ff-0291b95db13d"

        - artefacts-dir: "ebrainsquery/v3/Dataset"
          query-id: "fe925a3a-bfcd-43a9-8eab-f8d4589cedea"

        - artefacts-dir: "ebrainsquery/v3/DatasetVersion"
          query-id: "64ad0cd6-fbd6-47d3-b247-099e9ce8f313"
    steps:
    - uses: actions/checkout@v4
    - uses: actions/setup-python@v4
      with:
        python-version: '3.10'
    - name: 'Install dependencies'
      run: |
        pip install ebrains-drive
        pip install git+https://github.com/xgui3783/ebrains-iam-util.git
    - name: 'Fetch and Sync to KG proxy'
      run: |
        export EBRAINS_QUERY_ID=${{ matrix.query-id }}
        export EBRAINS_ARTEFACTS_DIR=${{ matrix.artefacts-dir }}
        export EBRAINS_CCFLOW_CLIENT_ID=${{ env.EBRAINS_CCFLOW_CLIENT_ID }}
        export EBRAINS_CCFLOW_CLIENT_SECRET=${{ env.EBRAINS_CCFLOW_CLIENT_SECRET }}

        python _ci/cron_sync_kg_proxy.py
  
  latest-siibra-release:
    runs-on: ubuntu-latest
    env:
      GH_TOKEN: ${{ github.token }}
    outputs:
      LATEST_TAG: ${{ steps.get-latest-tag.outputs.LATEST_TAG }}
    steps:
    - id: get-latest-tag
      run: |
        LATEST_TAG=$(gh release -R fzj-inm1-bda/siibra-python ls --jq '.[0].tagName' --json 'tagName')
        echo LATEST_TAG=$LATEST_TAG
        echo "LATEST_TAG=$LATEST_TAG" >> $GITHUB_OUTPUT

  check-region-e2e:
    runs-on: ubuntu-latest
    needs:
    - update
    - latest-siibra-release
    steps:
    - uses: actions/checkout@v4
      with:
        repository: 'fzj-inm1-bda/siibra-python'
        ref: ${{ needs.latest-siibra-release.outputs.LATEST_TAG }}
    - uses: actions/setup-python@v5
      with:
        python-version: '3.10'
    - run: pip install -U pip && pip install -e . && pip install pytest
    - run: pytest e2e/core/test_region.py