added pftelDB param #20
Workflow file for this run
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| # Automatically build multi-architectural tagged container images and push them to DockerHub | |
| # https://github.com/FNNDSC/cookiecutter-chrisapp/wiki/Automatic-Builds | |
| # | |
| # - targeted platforms: x86_64, PowerPC64, ARM64 | |
| # - master is built as fnndsc/pl-topologicalcopy:latest | |
| # - tagged commits are built as fnndsc/pl-topologicalcopy:<tag> | |
| # - tagged commits are also uploaded to chrisstore.co | |
| # | |
| # In order to use this workflow, see | |
| # https://github.com/FNNDSC/cookiecutter-chrisapp/wiki/Automatic-Builds#steps-to-enable | |
| name: ci | |
| on: | |
| push: | |
| # we have to guess what the name of the default branch is | |
| branches: [ master, main, trunk ] | |
| tags: [ '**' ] | |
| pull_request: | |
| branches: [ master, main, trunk ] | |
| release: | |
| types: [ created ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: build | |
| run: docker build -t "${GITHUB_REPOSITORY,,}" . | |
| - name: nose tests | |
| run: docker run "${GITHUB_REPOSITORY,,}" nosetests | |
| publish: | |
| if: github.event_name == 'push' || github.event_name == 'release' | |
| runs-on: ubuntu-20.04 | |
| # we want to both push the build to DockerHub, but also | |
| # keep a local copy so that we can run | |
| # | |
| # docker run fnndsc/pl-app app --json > App.json | |
| # | |
| # buildx currently does not support multiple output locations, | |
| # neither can multi-architectural builds be loaded into docker. | |
| # Here we use a local registry to cache the build. | |
| services: | |
| registry: | |
| image: registry:2 | |
| ports: | |
| - 5000:5000 | |
| steps: | |
| - name: Get git tag | |
| id: git_info | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: echo "::set-output name=tag::${GITHUB_REF##*/}" | |
| - name: Decide image tag name | |
| id: determine | |
| env: | |
| git_tag: ${{ steps.git_info.outputs.tag }} | |
| run: | | |
| repo="${GITHUB_REPOSITORY,,}" # to lower case | |
| # if build triggered by tag, use tag name | |
| tag="${git_tag:-latest}" | |
| dock_image=$repo:$tag | |
| echo $dock_image | |
| echo "::set-output name=dock_image::$dock_image" | |
| echo "::set-output name=repo::$repo" | |
| - uses: actions/checkout@v2 | |
| # QEMU is for emulating non-x86_64 platforms | |
| - uses: docker/setup-qemu-action@v1 | |
| # buildx is the next-generation docker image builder | |
| - uses: docker/setup-buildx-action@v1 | |
| with: | |
| driver-opts: network=host | |
| # save some time during rebuilds | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: Login to DockerHub | |
| id: dockerhub_login | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v2 | |
| id: docker_build | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| tags: | | |
| ${{ steps.determine.outputs.dock_image }} | |
| localhost:5000/${{ steps.determine.outputs.dock_image }} | |
| ghcr.io/${{ steps.determine.outputs.dock_image }} | |
| platforms: linux/amd64 | |
| push: true | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Get plugin meta | |
| id: pluginmeta | |
| run: | | |
| repo=${{ steps.determine.outputs.repo }} | |
| dock_image=${{ steps.determine.outputs.dock_image }} | |
| docker pull localhost:5000/$dock_image | |
| docker tag localhost:5000/$dock_image $dock_image | |
| script=$(docker inspect --format '{{ (index .Config.Cmd 0) }}' $dock_image) | |
| json="$(docker run --rm $dock_image $script --json)" | |
| jq <<< "$json" # pretty print in log | |
| echo "::set-output name=json::$json" | |
| echo "::set-output name=title::$(jq -r '.title' <<< "$json")" | |
| - name: Update DockerHub description | |
| uses: peter-evans/dockerhub-description@v2 | |
| continue-on-error: true # it is not crucial that this works | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| short-description: ${{ steps.pluginmeta.outputs.title }} | |
| readme-filepath: ./README.rst | |
| repository: ${{ steps.determine.outputs.repo }} | |
| - name: Upload to ChRIS Store | |
| if: "!endsWith(steps.determine.outputs.dock_image, ':latest')" | |
| run: | | |
| repo=${{ steps.determine.outputs.repo }} | |
| dock_image=${{ steps.determine.outputs.dock_image }} | |
| descriptor_file=$(mktemp --suffix .json) | |
| cat > $descriptor_file << ENDOFPLUGINDESCRIPTION | |
| ${{ steps.pluginmeta.outputs.json }} | |
| ENDOFPLUGINDESCRIPTION | |
| res=$( | |
| curl -s -u "${{ secrets.CHRIS_STORE_USER }}" "https://chrisstore.co/api/v1/plugins/" \ | |
| -F "name=$(sed 's/^.*\///' <<< $repo)" \ | |
| -F "dock_image=$dock_image" \ | |
| -F "descriptor_file=@$descriptor_file" \ | |
| -F "public_repo=https://github.com/${{ github.repository }}" | |
| ) | |
| success=$? | |
| if [ "$success" = "0" ]; then | |
| href="$(jq -r '.collection.items[0].href' <<< "$res")" | |
| echo $href | |
| echo "::set-output name=pluginurl::$href" | |
| else | |
| echo "::error ::Failed upload to ChRIS Store" | |
| echo "$res" | |
| exit $success | |
| fi | |