Fix count_inputs

subdivide.py

@@ -84,7 +84,7 @@ def main(options: Namespace, inputdir: Path, outputdir: Path):
         'deletions': {k: sum(d.deletions for d in v) for k, v in diffs.items()},
         'total_changes': {k: sum(d.count_changes for d in v) for k, v in diffs.items()},
         'mean_percent_change': {k: np.mean([d.percent_change for d in v]) for k, v in diffs.items()},
-        'count_inputs': len(diffs)
+        'count_inputs': mapper.count()
     }
     summary_file = outputdir / 'summary.json'
     with summary_file.open('w') as out:

tests/test_example.py

@@ -31,11 +31,11 @@ def test_main(tmp_path: Path):
         assert set(summary[key].keys()) == expected_sub_keys
 
     assert 'count_inputs' in summary
-    assert type(summary['count_inputs']) is int
+    assert summary['count_inputs'] == len(list(inputdir.rglob('*.mnc')))
 
 
 def _rel(directory: Path) -> frozenset[Path]:
     return frozenset(
         filename.relative_to(directory)
-        for filename in directory.glob('**')
+        for filename in directory.rglob('*')
     )