update dev-requirements and pre-commit

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.3.4
+    rev: v0.7.0
     hooks:
       # Run the linter.
       - id: ruff

dev-requirements.txt

@@ -1,47 +1,101 @@
 # This file was autogenerated by uv via the following command:
-#    uv pip compile --extra=dev --output-file=dev-requirements.txt pyproject.toml
+#    uv pip compile --universal -p 3.11 --extra=dev --extra=docs --output-file=dev-requirements.txt pyproject.toml
 anytree==2.12.1
     # via pynxtools
 ase==3.23.0
     # via pynxtools
-build==1.2.1
+babel==2.16.0
+    # via mkdocs-material
+build==1.2.2.post1
     # via pip-tools
+certifi==2024.8.30
+    # via requests
 cfgv==3.4.0
     # via pre-commit
+charset-normalizer==3.4.0
+    # via requests
 click==8.1.7
     # via
     #   click-default-group
+    #   mkdocs
     #   pip-tools
     #   pynxtools
 click-default-group==1.2.4
     # via pynxtools
-contourpy==1.2.1
+colorama==0.4.6
+    # via
+    #   build
+    #   click
+    #   mkdocs
+    #   mkdocs-material
+    #   pytest
+contourpy==1.3.0
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-distlib==0.3.8
+distlib==0.3.9
     # via virtualenv
-filelock==3.15.4
+filelock==3.16.1
     # via virtualenv
-fonttools==4.53.0
+fonttools==4.54.1
     # via matplotlib
-h5py==3.11.0
+ghp-import==2.1.0
+    # via mkdocs
+h5py==3.12.1
     # via pynxtools
-identify==2.6.0
+hjson==3.1.0
+    # via
+    #   mkdocs-macros-plugin
+    #   super-collections
+identify==2.6.1
     # via pre-commit
-importlib-metadata==8.0.0
+idna==3.10
+    # via requests
+importlib-metadata==8.5.0
     # via pynxtools
 iniconfig==2.0.0
     # via pytest
-kiwisolver==1.4.5
+jinja2==3.1.4
+    # via
+    #   mkdocs
+    #   mkdocs-macros-plugin
+    #   mkdocs-material
+kiwisolver==1.4.7
     # via matplotlib
-lxml==5.2.2
+lxml==5.3.0
     # via pynxtools
-matplotlib==3.9.0
+markdown==3.7
+    # via
+    #   mkdocs
+    #   mkdocs-material
+    #   pymdown-extensions
+markupsafe==3.0.2
+    # via
+    #   jinja2
+    #   mkdocs
+matplotlib==3.9.2
     # via ase
 mergedeep==1.3.4
-    # via pynxtools
-mypy==1.10.1
+    # via
+    #   mkdocs
+    #   mkdocs-get-deps
+    #   pynxtools
+mkdocs==1.6.1
+    # via
+    #   pynxtools-raman (pyproject.toml)
+    #   mkdocs-macros-plugin
+    #   mkdocs-material
+mkdocs-get-deps==0.2.0
+    # via mkdocs
+mkdocs-macros-plugin==1.3.6
+    # via pynxtools-raman (pyproject.toml)
+mkdocs-material==9.5.42
+    # via pynxtools-raman (pyproject.toml)
+mkdocs-material-extensions==1.3.1
+    # via
+    #   pynxtools-raman (pyproject.toml)
+    #   mkdocs-material
+mypy==1.12.1
     # via pynxtools-raman (pyproject.toml)
 mypy-extensions==1.0.0
     # via mypy
@@ -61,65 +115,100 @@ packaging==24.1
     # via
     #   build
     #   matplotlib
+    #   mkdocs
+    #   mkdocs-macros-plugin
     #   pytest
     #   xarray
-pandas==2.2.2
+paginate==0.5.7
+    # via mkdocs-material
+pandas==2.2.3
     # via
     #   pynxtools
     #   xarray
-pillow==10.4.0
+pathspec==0.12.1
+    # via
+    #   mkdocs
+    #   mkdocs-macros-plugin
+pillow==11.0.0
     # via matplotlib
 pip==24.2
     # via pip-tools
 pip-tools==7.4.1
     # via pynxtools-raman (pyproject.toml)
-platformdirs==4.2.2
-    # via virtualenv
+platformdirs==4.3.6
+    # via
+    #   mkdocs-get-deps
+    #   virtualenv
 pluggy==1.5.0
     # via pytest
-pre-commit==3.7.1
+pre-commit==4.0.1
     # via pynxtools-raman (pyproject.toml)
+pygments==2.18.0
+    # via mkdocs-material
+pymdown-extensions==10.11.2
+    # via mkdocs-material
 pynxtools==0.7.4
     # via pynxtools-raman (pyproject.toml)
-pyparsing==3.1.2
+pyparsing==3.2.0
     # via matplotlib
-pyproject-hooks==1.1.0
+pyproject-hooks==1.2.0
     # via
     #   build
     #   pip-tools
-pytest==8.2.2
+pytest==8.3.3
     # via pynxtools-raman (pyproject.toml)
 python-dateutil==2.9.0.post0
     # via
+    #   ghp-import
     #   matplotlib
+    #   mkdocs-macros-plugin
     #   pandas
-pytz==2024.1
+pytz==2024.2
     # via pandas
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via
+    #   mkdocs
+    #   mkdocs-get-deps
+    #   mkdocs-macros-plugin
     #   pre-commit
+    #   pymdown-extensions
     #   pynxtools
-ruff==0.6.9
+    #   pyyaml-env-tag
+pyyaml-env-tag==0.1
+    # via mkdocs
+regex==2024.9.11
+    # via mkdocs-material
+requests==2.32.3
+    # via mkdocs-material
+ruff==0.7.0
     # via pynxtools-raman (pyproject.toml)
-scipy==1.13.1
+scipy==1.14.1
     # via ase
-setuptools==75.1.0
+setuptools==75.2.0
     # via pip-tools
 six==1.16.0
     # via
     #   anytree
     #   python-dateutil
-types-pyyaml==6.0.12.20240311
+super-collections==0.5.3
+    # via mkdocs-macros-plugin
+termcolor==2.5.0
+    # via mkdocs-macros-plugin
+types-pyyaml==6.0.12.20240917
     # via pynxtools-raman (pyproject.toml)
 typing-extensions==4.12.2
     # via mypy
-tzdata==2024.1
+tzdata==2024.2
     # via pandas
-virtualenv==20.26.3
+urllib3==2.2.3
+    # via requests
+virtualenv==20.27.0
     # via pre-commit
-wheel==0.43.0
+watchdog==5.0.3
+    # via mkdocs
+wheel==0.44.0
     # via pip-tools
-xarray==2024.6.0
+xarray==2024.9.0
     # via pynxtools
-zipp==3.19.2
+zipp==3.20.2
     # via importlib-metadata