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Scan from tamash #304

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RubelMozumder
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tomio13 and others added 2 commits November 27, 2024 13:54
I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...
RubelMozumder added a commit that referenced this pull request Nov 27, 2024
* space.

* Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml

* NXbias_spectroscopy.yaml

* Update NXscan.yaml

I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...

* Update NXcantilever_spm.yaml

added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations

* Update NXcircuit.yaml

minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers

* Update NXlockin.yaml

Minor changes in documentation,
removed some redundant information on the demodulated signal.

* Update NXpiezo_config_spm.yaml

minimal changes in docstrings

* Update NXpositioner_spm.yaml

minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point

* Update NXscan_control.yaml

some minor comment changes

* Generated nxdl files.

* Revert "Update NXscan.yaml"

This reverts commit 3f376f0.
This file is covered by #304  #304
---------

Co-authored-by: T. Haraszti <[email protected]>
RubelMozumder added a commit that referenced this pull request Nov 29, 2024
* space.

* Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml

* NXbias_spectroscopy.yaml

* Update NXscan.yaml

I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...

* Update NXcantilever_spm.yaml

added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations

* Update NXcircuit.yaml

minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers

* Update NXlockin.yaml

Minor changes in documentation,
removed some redundant information on the demodulated signal.

* Update NXpiezo_config_spm.yaml

minimal changes in docstrings

* Update NXpositioner_spm.yaml

minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point

* Update NXscan_control.yaml

some minor comment changes

* Generated nxdl files.

* Revert "Update NXscan.yaml"

This reverts commit 3f376f0.
This file is covered by #304  #304
---------

Co-authored-by: T. Haraszti <[email protected]>
RubelMozumder added a commit that referenced this pull request Dec 5, 2024
* space.

* Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml

* NXbias_spectroscopy.yaml

* Update NXscan.yaml

I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...

* Update NXcantilever_spm.yaml

added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations

* Update NXcircuit.yaml

minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers

* Update NXlockin.yaml

Minor changes in documentation,
removed some redundant information on the demodulated signal.

* Update NXpiezo_config_spm.yaml

minimal changes in docstrings

* Update NXpositioner_spm.yaml

minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point

* Update NXscan_control.yaml

some minor comment changes

* Generated nxdl files.

* Revert "Update NXscan.yaml"

This reverts commit 3f376f0.
This file is covered by #304  #304
---------

Co-authored-by: T. Haraszti <[email protected]>

Rename lockin_current_flip_number to loockin_current_flip_sign.

add NXidentifier in NXsensor_scan.

Delete unnecessary file.

Revert "Delete unnecessary file."

This reverts commit 8c6b03c.

Preparation for example in nomad.

Corrected typo in heterodyne word Update NXlockin.yaml

Minor fix.
RubelMozumder added a commit that referenced this pull request Dec 5, 2024
* space.

* Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml

* NXbias_spectroscopy.yaml

* Update NXscan.yaml

I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...

* Update NXcantilever_spm.yaml

added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations

* Update NXcircuit.yaml

minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers

* Update NXlockin.yaml

Minor changes in documentation,
removed some redundant information on the demodulated signal.

* Update NXpiezo_config_spm.yaml

minimal changes in docstrings

* Update NXpositioner_spm.yaml

minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point

* Update NXscan_control.yaml

some minor comment changes

* Generated nxdl files.

* Revert "Update NXscan.yaml"

This reverts commit 3f376f0.
This file is covered by #304  #304
---------

Co-authored-by: T. Haraszti <[email protected]>

Rename lockin_current_flip_number to loockin_current_flip_sign.

add NXidentifier in NXsensor_scan.

Delete unnecessary file.

Revert "Delete unnecessary file."

This reverts commit 8c6b03c.

Preparation for example in nomad.

Corrected typo in heterodyne word Update NXlockin.yaml

Minor fix.
RubelMozumder added a commit that referenced this pull request Dec 6, 2024
* First final draft for application definiton NXsts,
NXstm, NXaf, NXspm and base classes NXlockin,
NXbias_spectroscopy, cantilever_spm, NXbias_sweep,
NXpiezo_config_spm, NXpositioner_spm, NXscan_control,
NXpiezoelectric_material and NXrcs.

Finish review comments from Lev.

* Remove SPM folder.

* Remove SPM folder.

Revert "Remove SPM folder."

This reverts commit 3aeb39e.

PR review from Lukas!

Delete unnecessary files.

Revert "Delete unnecessary files."

This reverts commit 317a367.

Include the default key attribute on entry and include NXhistory under the NXsample for verbose purpose.

* Review from Tamash (#303)

* space.

* Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml

* NXbias_spectroscopy.yaml

* Update NXscan.yaml

I just added a slight clarification what we mean under the word scan.
However, it makes me wonder whether this should be more a base class than an application definition.
And whether the control parameter set should be only positional.
So, I have some doubts here...

* Update NXcantilever_spm.yaml

added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations

* Update NXcircuit.yaml

minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers

* Update NXlockin.yaml

Minor changes in documentation,
removed some redundant information on the demodulated signal.

* Update NXpiezo_config_spm.yaml

minimal changes in docstrings

* Update NXpositioner_spm.yaml

minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point

* Update NXscan_control.yaml

some minor comment changes

* Generated nxdl files.

* Revert "Update NXscan.yaml"

This reverts commit 3f376f0.
This file is covered by #304  #304
---------

Co-authored-by: T. Haraszti <[email protected]>

Rename lockin_current_flip_number to loockin_current_flip_sign.

add NXidentifier in NXsensor_scan.

Delete unnecessary file.

Revert "Delete unnecessary file."

This reverts commit 8c6b03c.

Preparation for example in nomad.

Corrected typo in heterodyne word Update NXlockin.yaml

Minor fix.

* Remove redundant files.
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2 participants