new release files

EnvironmentOntology · Feb 26, 2017 · 266789f · 266789f
1 parent bc78cbf
commit 266789f
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Showing 46 changed files with 446,561 additions and 274,020 deletions.
diff --git a/envo.json b/envo.json
diff --git a/envo.obo b/envo.obo
diff --git a/envo.owl b/envo.owl
diff --git a/imports/bfo_import.owl b/imports/bfo_import.owl
@@ -1,12 +1,12 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/envo/imports/bfo_import.owl#"
  xml:base="http://purl.obolibrary.org/obo/envo/imports/bfo_import.owl"
- xmlns:dc="http://purl.org/dc/elements/1.1/"
- xmlns:obo="http://purl.obolibrary.org/obo/"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
  xmlns:owl="http://www.w3.org/2002/07/owl#"
  xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:obo="http://purl.obolibrary.org/obo/"
+ xmlns:dc="http://purl.org/dc/elements/1.1/">
  <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/imports/bfo_import.owl">
  <dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo.owl"/>
  </owl:Ontology>
@@ -45,6 +45,7 @@
 
  <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000002">
  <rdfs:label xml:lang="en">continuant</rdfs:label>
+ <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
  <obo:IAO_0000115 xml:lang="en">An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.</obo:IAO_0000115>
  </owl:Class>
 
@@ -64,6 +65,7 @@
  <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004">
  <rdfs:label xml:lang="en">independent continuant</rdfs:label>
  <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
+ <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
  <obo:IAO_0000115 xml:lang="en">A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.</obo:IAO_0000115>
  </owl:Class>
 
@@ -84,6 +86,7 @@
  <owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016">
  <rdfs:label xml:lang="en">disposition</rdfs:label>
  <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
+ <owl:disjointWith rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
  </owl:Class>
 
 

diff --git a/imports/bfo_seed.owl b/imports/bfo_seed.owl
@@ -11,10 +11,9 @@ Ontology: <http://purl.obolibrary.org/obo/envo/imports/ro_seed.owl>
 Class: <http://purl.obolibrary.org/obo/RO_0002577> # system
 
 
+Ontology: <http://purl.obolibrary.org/obo/envo/imports/bfo_seed.owl>
 
-
-
-
-
-
-
+Class: <http://purl.obolibrary.org/obo/BFO_0000024> # fiat object part
+Class: <http://purl.obolibrary.org/obo/BFO_0000140> # continuant fiat boundary
+Class: <http://purl.obolibrary.org/obo/BFO_0000146> # two-dimensional continuant fiat boundary
+Class: <http://purl.obolibrary.org/obo/BFO_0000142> # one-dimensional continuant fiat boundary
diff --git a/imports/chebi_import.obo b/imports/chebi_import.obo
@@ -1,6 +1,6 @@
 format-version: 1.2
 ontology: envo/imports/chebi_import
-property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/144/chebi.owl
+property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/148/chebi.owl
 
 [Term]
 id: CHEBI:131621
@@ -22,6 +22,11 @@ id: CHEBI:13392
 name: NAD(P)H
 is_a: CHEBI:25524 ! NAD(P)
 
+[Term]
+id: CHEBI:134179
+name: volatile organic compound
+is_a: CHEBI:72695 ! organic molecule
+
 [Term]
 id: CHEBI:15022
 name: electron donor
@@ -303,12 +308,6 @@ id: CHEBI:18248
 name: iron atom
 is_a: CHEBI:33356 ! iron group element atom
 
-[Term]
-id: CHEBI:18254
-name: ribonucleoside
-is_a: CHEBI:33838 ! nucleoside
-is_a: CHEBI:47019 ! dihydroxytetrahydrofuran
-
 [Term]
 id: CHEBI:18276
 name: dihydrogen
@@ -337,12 +336,6 @@ id: CHEBI:18422
 name: sulfur dioxide
 is_a: CHEBI:48154 ! sulfur oxide
 
-[Term]
-id: CHEBI:21731
-name: N-glycosyl compound
-is_a: CHEBI:35352 ! organonitrogen compound
-is_a: CHEBI:63161 ! glycosyl compound
-
 [Term]
 id: CHEBI:21760
 name: N-methyl-amino acid
@@ -361,14 +354,8 @@ is_a: CHEBI:37622 ! carboxamide
 [Term]
 id: CHEBI:22256
 name: adenosine phosphate
-is_a: CHEBI:22260 ! adenosines
 is_a: CHEBI:61296 ! adenyl ribonucleotide
 
-[Term]
-id: CHEBI:22260
-name: adenosines
-is_a: CHEBI:26399 ! purine ribonucleoside
-
 [Term]
 id: CHEBI:22313
 name: alkaline earth metal atom
@@ -844,6 +831,7 @@ is_a: CHEBI:50860 ! organic molecular entity
 id: CHEBI:25701
 name: organic oxide
 is_a: CHEBI:25741 ! oxide
+is_a: CHEBI:72695 ! organic molecule
 
 [Term]
 id: CHEBI:25703
@@ -933,12 +921,6 @@ id: CHEBI:26393
 name: purine nucleoside triphosphate
 is_a: CHEBI:17326 ! nucleoside triphosphate
 
-[Term]
-id: CHEBI:26394
-name: purine nucleoside
-is_a: CHEBI:26401 ! purines
-is_a: CHEBI:33838 ! nucleoside
-
 [Term]
 id: CHEBI:26395
 name: purine nucleotide
@@ -957,12 +939,6 @@ name: purine ribonucleoside triphosphate
 is_a: CHEBI:17972 ! ribonucleoside triphosphate
 is_a: CHEBI:26393 ! purine nucleoside triphosphate
 
-[Term]
-id: CHEBI:26399
-name: purine ribonucleoside
-is_a: CHEBI:18254 ! ribonucleoside
-is_a: CHEBI:26394 ! purine nucleoside
-
 [Term]
 id: CHEBI:26400
 name: purine ribonucleotide
@@ -1066,12 +1042,6 @@ id: CHEBI:26835
 name: sulfur molecular entity
 is_a: CHEBI:33304 ! chalcogen molecular entity
 
-[Term]
-id: CHEBI:26912
-name: oxolanes
-is_a: CHEBI:25693 ! organic heteromonocyclic compound
-is_a: CHEBI:38104 ! oxacycle
-
 [Term]
 id: CHEBI:26932
 name: tetrapyrrole
@@ -1136,6 +1106,7 @@ is_a: CHEBI:35366 ! fatty acid
 [Term]
 id: CHEBI:27338
 name: xylene
+is_a: CHEBI:134179 ! volatile organic compound
 is_a: CHEBI:38975 ! methylbenzene
 
 [Term]
@@ -2067,13 +2038,6 @@ name: benzenoid aromatic compound
 is_a: CHEBI:33598 ! carbocyclic compound
 is_a: CHEBI:33659 ! organic aromatic compound
 
-[Term]
-id: CHEBI:33838
-name: nucleoside
-is_a: CHEBI:21731 ! N-glycosyl compound
-is_a: CHEBI:26912 ! oxolanes
-is_a: CHEBI:61120 ! nucleobase-containing molecular entity
-
 [Term]
 id: CHEBI:33839
 name: macromolecule
@@ -2979,19 +2943,10 @@ name: dioxanes
 is_a: CHEBI:25693 ! organic heteromonocyclic compound
 is_a: CHEBI:38104 ! oxacycle
 
-[Term]
-id: CHEBI:47017
-name: tetrahydrofuranol
-is_a: CHEBI:26912 ! oxolanes
-
-[Term]
-id: CHEBI:47019
-name: dihydroxytetrahydrofuran
-is_a: CHEBI:47017 ! tetrahydrofuranol
-
 [Term]
 id: CHEBI:47032
 name: 1,4-dioxane
+is_a: CHEBI:134179 ! volatile organic compound
 is_a: CHEBI:46923 ! dioxane
 
 [Term]
@@ -3473,11 +3428,6 @@ name: aluminium cation
 is_a: CHEBI:25213 ! metal cation
 is_a: CHEBI:60272 ! aluminium ion
 
-[Term]
-id: CHEBI:63161
-name: glycosyl compound
-is_a: CHEBI:63299 ! carbohydrate derivative
-
 [Term]
 id: CHEBI:63248
 name: oxidising agent