11012024

This release ships with updates to GET_PANGENES: code changes since the publication of the manuscript, involving:

• fixed bug in handling - strand coords in sub query2ref_coords
• sub _parseCIGARfeature handles correctly 1bp CS-type SNPs when computing overlap with optional query coord
• tested rename_pangenes.pl with MAGIC16 rice dataset, check AgBioData nomenclature rules at https://github.com/Ensembl/plant-scripts/blob/df9cfdef5e49e6f463a08e7ed8ec8a04556735ff/pangenes/rename_pangenes.pl#L5C48-L5C57 ; code to update a previous cluster set not yet in place