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escaped special chars with \

escaped special chars with \ #5

Workflow file for this run

# See the NOTICE file distributed with this work for additional information
# regarding copyright ownership.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
name: "CI"
on:
push:
branches:
- master
pull_request:
defaults:
run:
working-directory: ./
jobs:
tests:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: shogo82148/actions-setup-perl@v1
with:
perl-version: "5.28"
- name: Install dependencies
run: |
sudo apt-get install -y wget python3 python3-pip python3-setuptools mysql-client libmysqlclient-dev libdb-dev g++-10 bedtools r-base
make install_REST
make install_ensembl
make install_repeats
make install_pangenes
PERL5LIB=$PWD/lib:$PERL5LIB
export PERL5LIB
shell: bash
- name: Run tests
run: |
make test_travis
make test_repeats_travis
make test_pangenes