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Add TUV-x to CAM #784

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Add TUV-x to CAM #784

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Commits on Oct 6, 2022

  1. add tuv-x to externals

    @mattldawson
    mattldawson committed Oct 6, 2022
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Commits on Oct 10, 2022

  1. update externals for tuv-x and json-fortran

    @mattldawson
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Commits on Oct 12, 2022

  1. add tuv-x to cam build

    @mattldawson
    mattldawson committed Oct 12, 2022
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Commits on Oct 13, 2022

  1. compile in MPI support only if needed

    @mattldawson
    mattldawson committed Oct 13, 2022
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  2. Merge pull request #1 from mattldawson/develop-160-tuv-build 

    Develop 160 tuv build
    @K20shores
    K20shores authored Oct 13, 2022
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Commits on Oct 18, 2022

  1. draft TUV-x wrapper; link TUV-x libs

    @mattldawson
    mattldawson committed Oct 18, 2022
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Commits on Oct 19, 2022

  1. add MPI/OpenMP support to TUV-x wrapper

    @mattldawson
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  2. offset OMP thread for use with array of TUV-x cores

    @mattldawson
    mattldawson committed Oct 19, 2022
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Commits on Oct 20, 2022

  1. add TUV-x run function

    @mattldawson
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Commits on Oct 21, 2022

  1. Merge pull request #2 from mattldawson/develop-162-draft-wrapper 

    Develop 162 draft wrapper
    @mattldawson
    mattldawson authored Oct 21, 2022
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  2. create temporary TUV-x for CAM (#3)

    @mattldawson
    mattldawson authored Oct 21, 2022
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Commits on Nov 1, 2022

  1. add height and temperature updaters to tuv-x wrapper

    @mattldawson
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Commits on Nov 2, 2022

  1. set up remaining profile updaters

    @mattldawson
    mattldawson committed Nov 2, 2022
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Commits on Nov 3, 2022

  1. send wavelength grid to TUV-x

    @mattldawson
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Commits on Nov 4, 2022

  1. add radiator updater for aerosols

    @mattldawson
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  2. send CAM height and temperature data to TUV-x

    @mattldawson
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Commits on Nov 7, 2022

  1. fix height variables sent to tuvx

    @mattldawson
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  2. send surface albedos to TUV-x

    @mattldawson
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  3. send air density to TUV-x

    @mattldawson
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  4. send O2 and O3 concentrations to TUV-x

    @mattldawson
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Commits on Nov 8, 2022

  1. sent solar zenith angle to TUV-x

    @mattldawson
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  2. send ET flux to tuv-x

    @mattldawson
    mattldawson committed Nov 8, 2022
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Commits on Nov 9, 2022

  1. use native TUV-x grid for photo calcs

    @mattldawson
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Commits on Nov 10, 2022

  1. send aerosol optical properties to tuv-x

    @mattldawson
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  2. output whether using online aerosols; include air scale height for ex… 

    …o values
    @mattldawson
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  3. send above-column O2 and O3 concentrations to TUV-x

    @mattldawson
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Commits on Nov 11, 2022

  1. add diagnostic TUV-x output; set wavelength edges; fix et flux values

    @mattldawson
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Commits on Nov 14, 2022

  1. pass earth sun distance to TUV-x

    @mattldawson
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  2. minor clean up

    @mattldawson
    mattldawson committed Nov 14, 2022
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  3. update externals file

    @mattldawson
    mattldawson committed Nov 14, 2022
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Commits on Nov 15, 2022

  1. Tuvx options (#5) 

    * implement tuvx namelist options

        modified:   Externals_CAM.cfg
        modified:   bld/namelist_files/namelist_definition.xml
        modified:   cime_config/buildlib
        modified:   src/chemistry/mozart/chemistry.F90
        modified:   src/chemistry/mozart/mo_gas_phase_chemdr.F90
        modified:   src/chemistry/mozart/mo_tuvx.F90

* update tuvx config script; adjust tuvx build

Co-authored-by: Matthew Dawson <[email protected]>
    @fvitt @mattldawson
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  2. update for changes in TUV-x

    @mattldawson
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  3. merge main to develop-167-tuvx-inputs

    @mattldawson
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  4. draft MOZART TUV-x configuration file

    @mattldawson
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Commits on Nov 16, 2022

  1. Develop 167 tuvx inputs (#4) 

    * add height and temperature updaters to tuv-x wrapper

* set up remaining profile updaters

* send wavelength grid to TUV-x

* add radiator updater for aerosols

* send CAM height and temperature data to TUV-x

* fix height variables sent to tuvx

* send surface albedos to TUV-x

* send air density to TUV-x

* send O2 and O3 concentrations to TUV-x

* sent solar zenith angle to TUV-x

* send ET flux to tuv-x

* use native TUV-x grid for photo calcs

* send aerosol optical properties to tuv-x

* output whether using online aerosols; include air scale height for exo values

* send above-column O2 and O3 concentrations to TUV-x

* add diagnostic TUV-x output; set wavelength edges; fix et flux values

* pass earth sun distance to TUV-x

* minor clean up

* update externals file

* update for changes in TUV-x
    @mattldawson
    mattldawson authored Nov 16, 2022
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  2. draft MOZART-TS1 TUV-x config file

    @mattldawson
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  3. merge develop-add-tuvx into develop-163-mechanism-config

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  4. draft MOZART-TSMLT TUV-x config file

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Commits on Nov 18, 2022

  1. draft mapping for tuv-x photo rates

    @mattldawson
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  2. mix tuv map message passing

    @mattldawson
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Commits on Nov 19, 2022

  1. update TUV-x TS1 config

    @mattldawson
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Commits on Nov 23, 2022

  1. add euv rate calc calls to tuv-x

    @mattldawson
    mattldawson committed Nov 23, 2022
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Commits on Nov 29, 2022

  1. fix tuvx_active flag use; fix height values near surface

    @mattldawson
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  2. exclude dark columns from photo calculations

    @mattldawson
    mattldawson committed Nov 29, 2022
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Commits on Dec 1, 2022

  1. fix flux and density calcs

    @mattldawson
    mattldawson committed Dec 1, 2022
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  2. add missing MOZART photo rates

    @mattldawson
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Commits on Dec 14, 2022

  1. update for new TUV-x build scripts

    @mattldawson
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Commits on Dec 15, 2022

  1. update MOZART TUV-x config

    @mattldawson
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  2. update TS1 TUV-x config format

    @mattldawson
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  3. add h2o photo rates to TS1 TUV-x config

    @mattldawson
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  4. add new datasets to TS1 TUV-x config

    @mattldawson
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  5. update TUV-x config format

    @mattldawson
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Commits on Dec 21, 2022

  1. add remaining TS1 config excluding jno

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Commits on Dec 22, 2022

  1. add jno stub function

    @mattldawson
    mattldawson committed Dec 22, 2022
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  2. finish jno calculation

    @mattldawson
    mattldawson committed Dec 22, 2022
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  3. update TSMLT config file

    @mattldawson
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Commits on Dec 24, 2022

  1. update tuv-x build flags

    @mattldawson
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  2. Update tuvx_MOZART_TS1.json 

    Fix O2 rate configs
    @mattldawson
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Commits on Jan 11, 2023

  1. output photo rate diagnostics on CAM vertical grid

    @mattldawson
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  2. Merge branch 'develop-163-mechanism-config' of https://github.com/mat… 

    …tldawson/CAM into develop-163-mechanism-config
    @mattldawson
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Commits on Jan 13, 2023

  1. fix TUV-x config filees for air radiator; add disable aerosol option … 

    …for TUV-x
    @mattldawson
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Commits on Jan 20, 2023

  1. improve et flux edge calcs; use scale height for 02, 03

    @mattldawson
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Commits on Jan 26, 2023

  1. fix index offset in photo rate profiles

    @mattldawson
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Commits on Jan 27, 2023

  1. minor profile calculation changes

    @mattldawson
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Commits on Jan 30, 2023

  1. add thin top layer to TUV-x grid

    @mattldawson
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Commits on Jan 31, 2023

  1. adjust top layer density calculations

    @mattldawson
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  2. add in ET mid values

    @mattldawson
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Commits on Feb 3, 2023

  1. update build; adjust O2 profile

    @mattldawson
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Commits on Feb 23, 2023

  1. update tuvx config files

    @mattldawson
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  2. use TUV-x from first time step

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Commits on Feb 24, 2023

  1. use LUT for first time step

    @mattldawson
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  2. combine TS1 and TSMLT tuv-x configurations

    @mattldawson
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  3. add clouds to TUV-x radiators

    @mattldawson
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Commits on Mar 14, 2023

  1. Add TUV-x config files and use rates to drive chemistry (#7) 

    * add height and temperature updaters to tuv-x wrapper

* set up remaining profile updaters

* send wavelength grid to TUV-x

* add radiator updater for aerosols

* send CAM height and temperature data to TUV-x

* fix height variables sent to tuvx

* send surface albedos to TUV-x

* send air density to TUV-x

* send O2 and O3 concentrations to TUV-x

* sent solar zenith angle to TUV-x

* send ET flux to tuv-x

* use native TUV-x grid for photo calcs

* send aerosol optical properties to tuv-x

* output whether using online aerosols; include air scale height for exo values

* send above-column O2 and O3 concentrations to TUV-x

* add diagnostic TUV-x output; set wavelength edges; fix et flux values

* pass earth sun distance to TUV-x

* minor clean up

* update externals file

* update for changes in TUV-x

* draft MOZART TUV-x configuration file

* draft MOZART-TS1 TUV-x config file

* draft MOZART-TSMLT TUV-x config file

* draft mapping for tuv-x photo rates

* mix tuv map message passing

* update TUV-x TS1 config

* add euv rate calc calls to tuv-x

* fix tuvx_active flag use; fix height values near surface

* exclude dark columns from photo calculations

* fix flux and density calcs

* add missing MOZART photo rates

* update for new TUV-x build scripts

* update MOZART TUV-x config

* update TS1 TUV-x config format

* add h2o photo rates to TS1 TUV-x config

* add new datasets to TS1 TUV-x config

* update TUV-x config format

* add remaining TS1 config excluding jno

* add jno stub function

* finish jno calculation

* update TSMLT config file

* update tuv-x build flags

* Update tuvx_MOZART_TS1.json

Fix O2 rate configs

* output photo rate diagnostics on CAM vertical grid

* fix TUV-x config filees for air radiator; add disable aerosol option for TUV-x

* improve et flux edge calcs; use scale height for 02, 03

* fix index offset in photo rate profiles

* minor profile calculation changes

* add thin top layer to TUV-x grid

* adjust top layer density calculations

* add in ET mid values

* update build; adjust O2 profile

* update tuvx config files

* use TUV-x from first time step
    @mattldawson
    mattldawson authored Mar 14, 2023
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Commits on Apr 4, 2023

  1. switching to a build of musica (#8) 

    * switching to a build of musica

* disabling tests and explicitly setting a build of TUVX

* updating musica branch

* update path to tuv-x data

---------

Co-authored-by: Matthew Dawson <[email protected]>
    @K20shores @mattldawson
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  2. merge develop-add-tuvx into develop-add-clouds

    @mattldawson
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  3. fix duplicated code from merge; remove first time step filter for usi… 

    …ng TUV-x
    @mattldawson
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  4. disable TUV-x until ready for use in CAM

    @mattldawson
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  5. merge cam_development into develop-add-tuvx

    @mattldawson
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  6. update comments

    @mattldawson
    mattldawson committed Apr 4, 2023
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  7. merge cam_development into develop-add-tuvx

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Commits on Apr 5, 2023

  1. revert changes to chem-pp code

    @mattldawson
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Commits on Oct 6, 2023

  1. Merge branch 'cam_development' into develop-add-tuvx

    @mattldawson
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  2. disable aerosols temporarily

    @mattldawson
    mattldawson committed Oct 6, 2023
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  3. update externals

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Commits on Feb 1, 2024

  1. Merge branch 'cam_development' into develop-add-tuvx

    @mattldawson
    mattldawson committed Feb 1, 2024
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  2. update TUV-x

    @mattldawson
    mattldawson committed Feb 1, 2024
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Commits on Mar 21, 2024

  1. Develop add heating rates (#9) 

    * update to latest TUV-x

* add heating rate terms to config

* add heating rate calcs

* remove default output of photo rates

* remove default TUV-x output

* initialize heating rates to zero

* fix max sza type

* update TUV-x commit
    @mattldawson
    mattldawson authored Mar 21, 2024
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Commits on Mar 22, 2024

  1. remove working arrays from tuvx wrapper class

    @mattldawson
    mattldawson committed Mar 22, 2024
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  2. clean up some comments

    @mattldawson
    mattldawson committed Mar 22, 2024
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Commits on Apr 5, 2024

  1. Address issues with the Intel compiler and aerosol wavelength grid in… 

    …dexing (#10)

* link to cpp std lib

* fix CMake flag, update TUV-x, and fix aerosol wavelength grid use
    @mattldawson
    mattldawson authored Apr 5, 2024
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Commits on Sep 11, 2024

  1. update tuvx build

    @mattldawson
    mattldawson committed Sep 11, 2024
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  2. update tuv-x commit

    @mattldawson
    mattldawson committed Sep 11, 2024
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Commits on Sep 13, 2024

  1. change for DEBUG compiler flags

    @fvitt
    fvitt committed Sep 13, 2024
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