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update externals to cesm3_0_alpha03d #1161

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The externals have been updated as follows:
ccs_config_cesm1.0.0 -> ccs_config_cesm1.0.7
cime6.1.0 -> cime6.1.29
cmeps1.0.2 -> cmeps1.0.16
cdeps1.0.48 -> cdeps1.0.53
pio2_6_2 -> pio2_6_3
ctsm5.2.027 -> ctsm5.3.002
fi_240516 -> fi_240828

Issue #1134 - PLB,SCT,SUB, and TMC test need to be updated for cime6.1.12
. The fix in this issue needs to be applied to this commit since cime6.1.0 has been updated to cime6.1.29

Fixes #1134

@brian-eaton brian-eaton self-assigned this Oct 3, 2024
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