Merge pull request #434 from fvitt/clbr_cesm2_2_rel

Transport CL and BR when middle-atmosphere chemistry is used for CESM2.2

doc/ChangeLog

@@ -1,5 +1,140 @@
 ===============================================================
 
+Tag name: cam_cesm2_2_rel_06
+Originator(s): fvitt
+Date: 6 Jan 2023
+One-line Summary: Transport CL and BR in WACCM-MA chemistry mechanisms
+Github PR URL: https://github.com/ESCOMP/CAM/pull/434
+
+Purpose of changes (include the issue number and title text for each relevant GitHub issue):
+
+ Need to transport CL and BR #314
+
+Describe any changes made to build system: NA
+
+Describe any changes made to the namelist: NA
+
+List any changes to the defaults for the boundary datasets: NA
+
+Describe any substantial timing or memory changes: NA
+
+Code reviewed by: cacraig
+
+List all files eliminated: NA
+
+List all files added and what they do: NA
+
+List all existing files that have been modified, and describe the changes:
+
+M	src/chemistry/pp_waccm_ma/chem_mech.doc
+M	src/chemistry/pp_waccm_ma/chem_mech.in
+M	src/chemistry/pp_waccm_ma/chem_mods.F90
+M	src/chemistry/pp_waccm_ma/m_spc_id.F90
+M	src/chemistry/pp_waccm_ma/mo_adjrxt.F90
+M	src/chemistry/pp_waccm_ma/mo_indprd.F90
+M	src/chemistry/pp_waccm_ma/mo_lin_matrix.F90
+M	src/chemistry/pp_waccm_ma/mo_lu_factor.F90
+M	src/chemistry/pp_waccm_ma/mo_lu_solve.F90
+M	src/chemistry/pp_waccm_ma/mo_nln_matrix.F90
+M	src/chemistry/pp_waccm_ma/mo_prod_loss.F90
+M	src/chemistry/pp_waccm_ma/mo_rxt_rates_conv.F90
+M	src/chemistry/pp_waccm_ma/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - add HO2 to the not-transported list
+
+M	src/chemistry/pp_waccm_ma_mam4/chem_mech.doc
+M	src/chemistry/pp_waccm_ma_mam4/chem_mech.in
+M	src/chemistry/pp_waccm_ma_mam4/chem_mods.F90
+M	src/chemistry/pp_waccm_ma_mam4/m_rxt_id.F90
+M	src/chemistry/pp_waccm_ma_mam4/m_spc_id.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_adjrxt.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_indprd.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_lin_matrix.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_lu_factor.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_lu_solve.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_nln_matrix.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_prod_loss.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_rxt_rates_conv.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_setrxt.F90
+M	src/chemistry/pp_waccm_ma_mam4/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+
+M	src/chemistry/pp_waccm_mad/chem_mech.doc
+M	src/chemistry/pp_waccm_mad/chem_mech.in
+M	src/chemistry/pp_waccm_mad/chem_mods.F90
+M	src/chemistry/pp_waccm_mad/m_spc_id.F90
+M	src/chemistry/pp_waccm_mad/mo_adjrxt.F90
+M	src/chemistry/pp_waccm_mad/mo_exp_sol.F90
+M	src/chemistry/pp_waccm_mad/mo_imp_sol.F90
+M	src/chemistry/pp_waccm_mad/mo_indprd.F90
+M	src/chemistry/pp_waccm_mad/mo_lin_matrix.F90
+M	src/chemistry/pp_waccm_mad/mo_lu_factor.F90
+M	src/chemistry/pp_waccm_mad/mo_lu_solve.F90
+M	src/chemistry/pp_waccm_mad/mo_nln_matrix.F90
+M	src/chemistry/pp_waccm_mad/mo_prod_loss.F90
+M	src/chemistry/pp_waccm_mad/mo_rxt_rates_conv.F90
+M	src/chemistry/pp_waccm_mad/mo_setrxt.F90
+M	src/chemistry/pp_waccm_mad/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - add HO2 to the not-transported list
+ - explicitly solve CO2 to be consistent with other waccm mechanisms
+ - use scalar solver for d-region ion chemistry mechanisms (mad)
+
+M	src/chemistry/pp_waccm_mad_mam4/chem_mech.doc
+M	src/chemistry/pp_waccm_mad_mam4/chem_mech.in
+M	src/chemistry/pp_waccm_mad_mam4/chem_mods.F90
+M	src/chemistry/pp_waccm_mad_mam4/m_rxt_id.F90
+M	src/chemistry/pp_waccm_mad_mam4/m_spc_id.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_adjrxt.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_exp_sol.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_imp_sol.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_indprd.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_lin_matrix.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_lu_factor.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_lu_solve.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_nln_matrix.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_prod_loss.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_rxt_rates_conv.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_setrxt.F90
+M	src/chemistry/pp_waccm_mad_mam4/mo_sim_dat.F90
+ - remove CL and BR from the not-transported list
+ - use scalar solver for d-region ion chemistry mechanisms (mad)
+
+If there were any failures reported from running test_driver.sh on any test
+platform, and checkin with these failures has been OK'd by the gatekeeper,
+then copy the lines from the td.*.status files for the failed tests to the
+appropriate machine below.  All failed tests must be justified.
+
+cheyenne/intel/aux_cam:
+fvitt@cheyenne6:/glade/scratch/fvitt/aux_cam_20230105154916> cs.status.aux_cam_20230105154916 | grep -v PASS | grep Overall
+  ERP_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.cheyenne_intel.cam-outfrq9s_wcm_ne30 (Overall: FAIL) details:
+ - pre-existing failure
+
+  ERC_D_Ln9.f19_f19_mg17.QPX2000.cheyenne_intel.cam-outfrq3s_waccm_ma (Overall: DIFF) details:
+  ERC_D_Ln9.f19_f19_mg17.QPX2000.cheyenne_intel.cam-outfrq3s_WX81 (Overall: DIFF) details:
+  ERP_Lh12.f19_f19_mg17.FW4madSD.cheyenne_intel.cam-outfrq3h (Overall: DIFF) details:
+  ERS_Ln9.f09_f09_mg17.FX2000.cheyenne_intel.cam-outfrq9s (Overall: DIFF) details:
+  ERS_Ln9.f19_f19_mg17.FXSD.cheyenne_intel.cam-outfrq9s (Overall: DIFF) details:
+  SMS_D_Ln9.f19_f19_mg17.FWma2000climo.cheyenne_intel.cam-outfrq9s (Overall: DIFF) details:
+  SMS_D_Ln9.f19_f19_mg17.FXHIST.cheyenne_intel.cam-outfrq9s_amie (Overall: DIFF) details:
+ - expected baseline failures due to change in WACCM-MA chemistry mechanisms
+
+izumi/nag/aux_cam:
+  DAE.f45_f45_mg37.FHS94.izumi_nag.cam-dae (Overall: FAIL) details:
+ - pre-existing failure
+
+  ERC_D_Ln9.f10_f10_mg37.QPC4X.izumi_nag.cam-outfrq3s_newyear (Overall: DIFF) details:
+  ERC_D_Ln9.f10_f10_mg37.QPWmaC6.izumi_nag.cam-outfrq3s (Overall: DIFF) details:
+  SMS_P48x1_D_Ln9.f19_f19_mg17.FW4madSD.izumi_nag.cam-outfrq9s (Overall: DIFF) details:
+ - expected baseline failures due to change in WACCM-MA chemistry mechanisms
+
+izumi/pgi/aux_cam: All PASS
+
+Summarize any changes to answers: Larger than roundoff for WACCM-MA configurations
+
+===============================================================
+===============================================================
+
 Tag name: cam_cesm2_2_rel_05
 Originator(s): peverwhee, lauritzen
 Date: January 4, 2023
@@ -183,7 +318,7 @@ platform, and checkin with these failures has been OK'd by the gatekeeper,
 then copy the lines from the td.*.status files for the failed tests to the
 appropriate machine below.  All failed tests must be justified.
 
-Standard regression testing was not made as it would not uncover any errors in this modification.  
+Standard regression testing was not made as it would not uncover any errors in this modification.
 Instead, ran:
   ./create_newcase --case test_FSCAM --compset FSCAM --res T42_T42
   cd test_FSCAM