Merge pull request #52 from ENCODE-DCC/PIP-875_hotfix_kentutils_version

Pip 875 hotfix kentutils version
ENCODE-DCC · Jan 9, 2020 · be49551 · be49551
2 parents 2028995 + 403ae0e
commit be49551
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -51,9 +51,9 @@ RUN unzip v1.2.31.zip && rm v1.2.31.zip
 RUN cd RSEM-1.2.31 && make
 ENV PATH="/software/RSEM-1.2.31:${PATH}"
 
-# Install BedGraphToBigWig and bedSort
-RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig && chmod +x bedGraphToBigWig
-RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedSort && chmod +x bedSort
+# Install kentutils 385
+RUN git clone https://github.com/ENCODE-DCC/kentutils_v385_bin_bulkrna.git
+ENV PATH=${PATH}:/software/kentutils_v385_bin_bulkrna/
 
 # Install qc-utils 19.8.1