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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: be9b4b929f98b38a87c4babc79888bea
+tags: d77d1c0d9ca2f4c8421862c7c5a0d620
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diff --git a/_downloads/0aecfffd36b5ba31ccaadc6f37c60ad2/SIESTA-Convergence.pdf b/_downloads/0aecfffd36b5ba31ccaadc6f37c60ad2/SIESTA-Convergence.pdf
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diff --git a/_sources/day5/yambo-tutorial.md.txt b/_sources/day5/yambo-tutorial.md.txt
diff --git a/_sources/days3+4/day3.rst.txt b/_sources/days3+4/day3.rst.txt
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+:sequential_nav: next
+
+..  _day3-siesta1:
+
+Day 3: SIESTA I
+===============
+
+SIESTA basics
+-------------
+
+Lecture by Prof. Emilio Artacho (CIC NanoGUNE, Ikerbasque, and University of Cambridge).
+
+Slides available here: :download:`SIESTA-Intro.pdf </_static/siesta/SIESTA-Intro.pdf>`.
+
+
+A first contact with SIESTA: inputs, execution and outputs
+-----------------------------------------------------------
+
+Practical session led by Dr. Federico Pedron (ICN2).
+
+Tutorials covered:
+
+- `A First Encounter - Part 1: Running SIESTA <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/first-encounter/index.html>`_.  Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/01-FirstEncounter_I
+
+- `A First Encounter - Part 2: Choosing your level of theory <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/first-encounter-theorylevel/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/02-FirstEncounter_II
+
+Introductory slides available here: :download:`SIESTA-First_encounter.pdf </_static/siesta/SIESTA-First_encounter.pdf>`.
+
+Basis sets
+----------
+
+Lecture by Dr. Miguel Pruneda (CINN-CSIC).
+
+Slides available here: :download:`SIESTA-Basis_sets.pdf </_static/siesta/SIESTA-Basis_sets.pdf>`.
+
+
+Basis set optimization
+----------------------
+
+Practical session led by Dr. Federico Pedron (ICN2).
+
+Tutorials covered:
+
+- `Basis set optimization <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/basis-optimization/index.html>`_
+- `Basis sets - Tips and tricks <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/basis-sets/index.html>`_
+
+Files for the tutorial::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/03-BasisSets
+
+Introductory slides available here: :download:`SIESTA-Basis_set_optimization.pdf </_static/siesta/SIESTA-Basis_set_optimization.pdf>`.
+
+Convergence (k points, mesh, mixing)
+------------------------------------
+
+Practical session led by Dr. Catalina Coll (ICN2).
+
+Tutorials covered:
+
+- `The real-space grid <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/grid-convergence/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/04a-GridConvergence
+
+- `Sampling of the BZ with k-points <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/kpoint-convergence/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/04b-KPointConvergence
+
+- `The self-consistent-field cycle <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/scf-convergence/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day3-Wed/04c-SCF
+
+Introductory slides available here: :download:`SIESTA-Convergence.pdf </_static/siesta/SIESTA-Convergence.pdf>`.
+
diff --git a/_sources/days3+4/day4.rst.txt b/_sources/days3+4/day4.rst.txt
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+:sequential_nav: next
+
+..  _day4-siesta2:
+
+Day 4: SIESTA II
+================
+
+Molecular Dynamics with SIESTA
+------------------------------
+
+Practical session led by Dr. Ernane de Freitas (ICN2).
+
+Tutorials covered:
+
+- `Molecular Dynamics <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/advanced/molecular-dynamics/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day4-Thu/01-MolecularDynamics
+
+Introductory slides available here: :download:`SIESTA-MD.pdf </_static/siesta/SIESTA-MD.pdf>`.
+
+
+Analysis tools
+--------------
+
+Practical session led by Dr. Miguel Pruneda (CINN-CSIC).
+
+Tutorials covered:
+
+- `Analysis tools <https://docs.siesta-project.org/projects/siesta/en/latest/tutorials/basic/analysis-tools/index.html>`_. Files available at::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day4-Thu/02-Analysis
+
+Introductory slides available here: :download:`SIESTA-Analysis_tools.pdf </_static/siesta/SIESTA-Analysis_tools.pdf>`.
+
+
+Features available in SIESTA: spin-orbit couplings, TranSIESTA, and others
+--------------------------------------------------------------------------
+
+Lecture by Dr. Nick Papior (Technical University of Denmark).
+
+Slides available here: :download:`SIESTA-Features.pdf </_static/siesta/SIESTA-Features.pdf>`.
+
+
+Pushing the boundaries of SIESTA: accelerated and massively parallel solvers
+----------------------------------------------------------------------------
+
+Practical session led by Dr. Alberto García (ICMAB-CSIC).
+
+Tutorials covered:
+
+- ELSI-ELPA.
+- ELSI-PEXSI.
+
+Files for the tutorial::
+
+    /leonardo_work/EUHPC_TD02_030/siesta-tutorials/day4-Thu/03-SiestaSolvers
+
+Slides available here: :download:`SIESTA-Solvers.pdf </_static/siesta/SIESTA-Solvers.pdf>`.
+
diff --git a/_sources/days3+4/setup.rst.txt b/_sources/days3+4/setup.rst.txt
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+SIESTA setup
+============
+
+Directory with tutorials
+------------------------
+For every practical there is a folder in the shared directory
+``/leonardo_work/EUHPC_TD02_030/siesta-tutorials`` that contains all the files
+you will need for said practical. At the start of every tutorial, please copy
+the required files from that shared directory to your scratch folder. For
+example, for the first tutorial::
+
+$ cp -pr /leonardo_work/EUHPC_TD02_030/siesta-tutorials/01-FirstEncounter_I .
+
+Please do NOT copy these files before the start of the practical, in case they
+are updated shortly before the practical starts.
+
+
+Running SIESTA
+--------------
+You will find a sample script on how to run SIESTA in
+``/leonardo_work/EUHPC_TD02_030/softwares/siesta-5.0beta1/runsample.sh``: ::
+
+    #!/bin/bash
+    #SBATCH -J tutorialXX
+    #SBATCH -n 8
+    #SBATCH -t 0:30:00
+    #SBATCH -o %x-%j.out
+    #SBATCH -e %x-%j.err
+    #SBATCH --partition=boost_usr_prod
+    #SBATCH -D .
+
+    # DO NOT CHANGE THIS LINE
+    source /leonardo_work/EUHPC_TD02_030/softwares/siesta-5.0beta1/siestarc.sh
+
+    # EDIT THE CORRECT INPUT AND OUTPUT FILES.
+    srun -n 8 siesta < input.fdf > output.out
+
+
+Note that ``input.fdf`` and ``output.out`` are generic input and output file names, for
+each execution of siesta you will need to change them to the actual names of
+your input and output files. It is also convenient to change the name of the job
+(``#SBATCH -J option``) to something that allows you to identify (vs. your other
+submissions) when checking the status of the queue.
+
+
+
+Suggested Software for Visualization
+------------------------------------
+If you run visualizations in your own PC, you may want to have a few of these
+installed. Some are redundant, and will depend on your own preferences.
+
+- `gnuplot <http://www.gnuplot.info/>`_
+- `xcrysden <http://www.xcrysden.org/>`_
+- `vesta <https://jp-minerals.org/vesta/en/>`_
+- `vmd <https://www.ks.uiuc.edu/Research/vmd/>`_
+- `ovito <https://www.ovito.org/about/>`_
+- Python with matplotlib
+
+
+
+..
+  SIESTA source code
+  ------------------
+  If you want to try your own SIESTA compilation, have a look at this `SIESTA
+  compilation how-to <https://docs.siesta-project.org/projects/siesta/en/latest/installation/quick-install.html>`_ .
+  Be sure to have all dependencies beforehand. Note that we will not be answering
+  questions regarding compilation or other installations during the school.
diff --git a/_sources/guide.rst.txt b/_sources/guide.rst.txt
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+Instructor's guide
+==================
+
+Why we teach this lesson
+------------------------
+
+
+
+Intended learning outcomes
+--------------------------
+
+
+
+Timing
+------
+
+
+
+Preparing exercises
+-------------------
+
+e.g. what to do the day before to set up common repositories.
+
+
+
+Other practical aspects
+-----------------------
+
+
+
+Interesting questions you might get
+-----------------------------------
+
+
+
+Typical pitfalls
+----------------