{2023.06}[foss/2021b] LAMMPS 23Jun2022 #360

laraPPr · 2023-10-10T06:28:46Z

9 out of 90 required modules missing:

tbb/2020.3-GCCcore-11.2.0 (tbb-2020.3-GCCcore-11.2.0.eb)
archspec/0.1.3-GCCcore-11.2.0 (archspec-0.1.3-GCCcore-11.2.0.eb)
Voro++/0.4.6-GCCcore-11.2.0 (Voro++-0.4.6-GCCcore-11.2.0.eb)
kim-api/2.3.0-GCCcore-11.2.0 (kim-api-2.3.0-GCCcore-11.2.0.eb)
xxd/8.2.4220-GCCcore-11.2.0 (xxd-8.2.4220-GCCcore-11.2.0.eb)
ScaFaCoS/1.0.1-foss-2021b (ScaFaCoS-1.0.1-foss-2021b.eb)
PLUMED/2.7.3-foss-2021b (PLUMED-2.7.3-foss-2021b.eb)
VTK/9.1.0-foss-2021b (VTK-9.1.0-foss-2021b.eb)
LAMMPS/23Jun2022-foss-2021b-kokkos (LAMMPS-23Jun2022-foss-2021b-kokkos.eb)

eessi-bot · 2023-10-10T06:28:50Z

Instance eessi-bot-citc-aws is configured to build:

arch x86_64/generic for repo eessi-2021.12
arch x86_64/generic for repo eessi.org-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi-2023.06-software
arch x86_64/intel/haswell for repo eessi-2021.12
arch x86_64/intel/haswell for repo eessi.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
arch x86_64/intel/skylake_avx512 for repo eessi.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
arch x86_64/amd/zen2 for repo eessi-2021.12
arch x86_64/amd/zen2 for repo eessi.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-2023.06-software
arch x86_64/amd/zen3 for repo eessi-2021.12
arch x86_64/amd/zen3 for repo eessi.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-2023.06-software
arch aarch64/generic for repo eessi-2021.12
arch aarch64/generic for repo eessi.org-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-2021.12
arch aarch64/neoverse_n1 for repo eessi.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-2021.12
arch aarch64/neoverse_v1 for repo eessi.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-2023.06-software

laraPPr · 2023-10-10T07:07:03Z

bot: build repo:eessi-2023.06-software arch:x86_64/generic

eessi-bot · 2023-10-10T07:07:05Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/generic from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/generic
handling command build repository:eessi-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 8032, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-10-10T07:07:13Z

New job on instance eessi-bot-citc-aws for architecture x86_64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8032

date	job status	comment
Oct 10 07:07:12 UTC 2023	submitted	job id `8032` awaits release by job manager
Oct 10 07:07:28 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 07:11:32 UTC 2023	running	job `8032` is running
Oct 10 08:28:04 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8032.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1696926385.tar.gz` size: 219 MiB (230487892 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/generic/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

laraPPr · 2023-10-10T08:35:14Z

bot: build repo:eessi-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi-2023.06-software arch:aarch64/generic
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-10-10T08:35:17Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/intel/haswell from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi-2023.06-software arch:x86_64/intel/skylake_avx512 from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen3 from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi-2023.06-software arch:aarch64/generic from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_n1 from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from laraPPr
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 8033, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 8034, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 8035, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8036, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 8037, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 8038, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8039, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-10-10T08:35:24Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-haswell for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8033

date	job status	comment
Oct 10 08:35:23 UTC 2023	submitted	job id `8033` awaits release by job manager
Oct 10 08:36:21 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:37:26 UTC 2023	running	job `8033` is running
Oct 10 09:48:35 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8033.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1696931236.tar.gz` size: 221 MiB (232522795 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:35:32Z

New job on instance eessi-bot-citc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8034

date	job status	comment
Oct 10 08:35:31 UTC 2023	submitted	job id `8034` awaits release by job manager
Oct 10 08:36:18 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:38 UTC 2023	running	job `8034` is running
Oct 10 09:36:12 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8034.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1696930487.tar.gz` size: 221 MiB (232282666 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:35:39Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8035

date	job status	comment
Oct 10 08:35:38 UTC 2023	submitted	job id `8035` awaits release by job manager
Oct 10 08:36:16 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:36 UTC 2023	running	job `8035` is running
Oct 10 09:42:27 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8035.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696930847.tar.gz` size: 220 MiB (230966979 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:35:46Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen3 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8036

date	job status	comment
Oct 10 08:35:45 UTC 2023	submitted	job id `8036` awaits release by job manager
Oct 10 08:36:13 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:34 UTC 2023	running	job `8036` is running
Oct 10 09:31:57 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8036.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1696930212.tar.gz` size: 220 MiB (231064640 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:35:54Z

New job on instance eessi-bot-citc-aws for architecture aarch64-generic for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8037

date	job status	comment
Oct 10 08:35:53 UTC 2023	submitted	job id `8037` awaits release by job manager
Oct 10 08:36:11 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:32 UTC 2023	running	job `8037` is running
Oct 10 08:48:45 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8037.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1696927688.tar.gz` size: 0 MiB (326350 bytes) entries: 90 modules under 2023.06/software/linux/aarch64/generic/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `archspec/0.1.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:36:01Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_n1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8038

date	job status	comment
Oct 10 08:36:00 UTC 2023	submitted	job id `8038` awaits release by job manager
Oct 10 08:36:09 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:29 UTC 2023	running	job `8038` is running
Oct 10 08:48:42 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8038.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1696927668.tar.gz` size: 0 MiB (326834 bytes) entries: 90 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `archspec/0.1.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-10T08:36:08Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.10/pr_360/8039

date	job status	comment
Oct 10 08:36:07 UTC 2023	submitted	job id `8039` awaits release by job manager
Oct 10 08:37:23 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 10 08:39:42 UTC 2023	running	job `8039` is running
Oct 10 08:48:47 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8039.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1696927648.tar.gz` size: 0 MiB (326077 bytes) entries: 90 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `archspec/0.1.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

laraPPr · 2023-10-10T10:01:59Z

== 2023-10-10 08:47:08,014 systemtools.py:356 DEBUG Determined CPU architecture: AArch64

== 2023-10-10 08:47:08,081 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Failed to determine system architecture based on aarch64-unknown-linux (at easybuild/easyblocks/t/tbb.py:101 in __init__)

ocaisa · 2023-10-10T10:04:44Z

See https://github.com/easybuilders/easybuild-easyblocks/blob/develop/easybuild/easyblocks/t/tbb.py#L94-L101 , looks like we need to add aarch64 there

ocaisa · 2023-10-10T10:12:29Z

Ah, TBB is actually an optional dependency when building on Intel arch: https://github.com/easybuilders/easybuild-easyconfigs/blob/c010dfe0b5d4b813d2e6bbaf8fec90baf85f71d2/easybuild/easyconfigs/l/LAMMPS/LAMMPS-23Jun2022-foss-2021b-kokkos-CUDA-11.4.1.eb#L47

ocaisa · 2023-10-10T10:13:11Z

So you could just remove the dep in a hook (or make it an arch specific dep in EasyBuild...I think you can do that)

boegel · 2023-10-10T10:23:25Z

We can add the tbb dependency conditionally in the easyconfig with a construct like:

if ARCH == 'x86_64':
    dependencies += [('tbb', '...')]

Always blindly included tbb as a dependency is a bug if it's only supported in Intel/AMD

laraPPr · 2023-10-12T14:40:07Z

easybuilders/easybuild-easyconfigs#19000

laraPPr · 2023-10-13T12:06:29Z

bot: build repo:eessi-2023.06-software

eessi-bot · 2023-10-13T12:06:32Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-2023.06-software from laraPPr
- expanded format: build repository:eessi-2023.06-software
handling command build repository:eessi-2023.06-software resulted in:
- no jobs were submitted

laraPPr · 2023-10-13T12:11:31Z

bot: build repo:eessi-hpc.org-2023.06-software

eessi-bot · 2023-10-13T12:11:33Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software
handling command build repository:eessi-hpc.org-2023.06-software resulted in:
- submitted job 47, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 48, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 49, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 50, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 51, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 52, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 53, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
- submitted job 54, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-10-13T12:11:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.10/pr_360/47

date	job status	comment
Oct 13 12:11:49 UTC 2023	submitted	job id `47` awaits release by job manager
Oct 13 12:12:36 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 13 12:20:06 UTC 2023	running	job `47` is running
Oct 13 13:25:21 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-47.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1697203430.tar.gz` size: 219 MiB (230503148 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/generic/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-13T12:11:52Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.10/pr_360/48

date	job status	comment
Oct 13 12:11:51 UTC 2023	submitted	job id `48` awaits release by job manager
Oct 13 12:12:38 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 13 12:20:09 UTC 2023	running	job `48` is running
Oct 13 13:28:26 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-48.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1697203585.tar.gz` size: 221 MiB (232534642 bytes) entries: 11377 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

eessi-bot · 2023-10-13T12:11:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.10/pr_360/49

date	job status	comment
Oct 13 12:11:53 UTC 2023	submitted	job id `49` awaits release by job manager
Oct 13 12:12:41 UTC 2023	released	job awaits launch by Slurm scheduler
Oct 13 12:21:19 UTC 2023	running	job `49` is running
Oct 13 12:39:54 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-49.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1697200744.tar.gz` size: 53 MiB (55865332 bytes) entries: 1194 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `Voro++/0.4.6-GCCcore-11.2.0` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

laraPPr · 2023-11-15T12:06:59Z

== 2023-11-15 11:51:34,153 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Sanity check failed: sanity check command cd /tmp/eb-1slalewl/eb-bghy0lr5/eb-bl41hw6g/eb-o20j5lci/eb-g1mavv4r/tmp7463qrog && LD_LIBRARY_PATH=$LIBRARY_PATH:$LD_LIBRARY_PATH mpirun -n 1 python -c 'from lammps import lammps; l=lammps(); l.file("/cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_n1/software/LAMMPS/23Jun2022-foss-2021b-kokkos/examples/balance/in.balance")' exited with code 1 (output: LAMMPS (23 Jun 2022 - Update 1)

OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98)

  using 1 OpenMP thread(s) per MPI task

Lattice spacing in x,y,z = 1.1655347 2.0187654 1.1655347

Created orthogonal box = (0 0 -0.58276737) to (58.276737 40.375308 0.58276737)

  1 by 1 by 1 MPI processor grid

Created 361 atoms 
using lattice units in orthogonal box = (0 0 -0.58276737) to (58.276737 40.375308 0.58276737)

  create_atoms CPU = 0.000 seconds

Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule

Neighbor list info ...

  update every 1 steps, delay 0 steps, check yes

  max neighbors/atom: 2000, page size: 100000

  master list distance cutoff = 2.8
ghost atom cutoff = 2.8

  binsize = 1.4, bins = 42 29 1

  1 neighbor lists, perpetual/occasional/extra = 1 0 0

  (1) pair lj/cut, perpetual

      attributes: half, newton on

      pair build: half/bin/atomonly/newton

      stencil: half/bin/2d

      bin: standard

Setting up Verlet run ...

  Unit style    : lj

  Current step  : 0

  Time step     : 0.005

Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes

   Step          Temp          E_pair         Press         f_10[3]          f_10

         0   25.701528     -29.143179     -1.2407285      1              1       

       100   26.241329     -29.685442      7.9973853      1              1   
200   26.364973     -29.8069        1.5374943      1              1       

       300   26.536041     -29.977442      2.3266255      1              1       

       400   26.593239     -30.036285      6.4409409      1              1       

       500   25.758931     -29.202281      0.63169899     1              1       

       600   26.182956     -29.628413      8.2759341      1              1       

       700   26.178016     -29.617146      1.3408724      1              1       

       800   25.785927     -29.329047      4.7746975      1              1       

       900   23.330114     -26.975455      9.5249917      1              1       

      1000   22.158525     -25.451411      1.5929558      1              1
1100   18.985702     -22.714519      7.3835594      1              1       

      1200   17.725492     -20.892696      7.5969141      1              1       

      1300   16.245349     -19.313122      3.4962639      1              1       

      1400   14.930062     -17.738077      2.145749       1              1       

      1500   14.206046     -16.894522      1.4407225      1              1       

      1600   13.429679     -16.126605      1.7866709      1              1       

      1700   12.711356     -15.467661      1.9910061      1              1       

      1800   12.64557      -15.296593      1.4555028      1              1       

      1900   12.595088     -15.216661      1.476061       1              1       

      2000   12.399899     -15.092306      1.8667394      1              1
2100   12.223764     -14.854026      1.1779008      1              1       

      2200   11.85576      -14.494318      1.2801577      1              1       

      2300   11.900876     -14.531973      1.9807282      1              1       

      2400   12.322899     -14.729887      1.3581954      1              1       

      2500   12.075932     -14.527619      1.382523       1              1       

      2600   11.839926     -14.235663      1.8295265      1              1       

      2700   11.546567     -13.959425      1.532536       1              1       

      2800   11.790032     -13.96041       1.3397406      1              1       

      2900   11.323995     -13.443242      1.6028966      1              1       

      3000   11.394544     -13.44245       1.5137429      1              1       

ERROR: Lost atoms: original 361 current 360 (src/thermo.cpp:481)
Last command: run               10000

--------------------------------------------------------------------------

Primary job  terminated normally, but 1 process returned

a non-zero exit code. Per user-direction, the job has been aborted.

--------------------------------------------------------------------------

--------------------------------------------------------------------------

mpirun detected that one or more processes exited with non-zero status, thus causing

the job to be terminated. The first process to do so was:



  Process name: [[41456,1],0]

  Exit code:    1

--------------------------------------------------------------------------

) (at easybuild/framework/easyblock.py:3655 in _sanity_check_step)

laraPPr · 2023-11-16T14:47:32Z

All three failed with the same error ERROR: Lost atoms: original 361 current 360 (src/thermo.cpp:481). So kokkos mappin should now be in order.
New pr to easybuild to fix the failing snity check easybuilders/easybuild-easyconfigs#19246

laraPPr · 2023-11-16T18:15:31Z

bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-11-16T18:15:35Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_v1 from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 835, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-11-16T18:15:38Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/835

date	job status	comment
Nov 16 18:15:37 UTC 2023	submitted	job id `835` awaits release by job manager
Nov 16 18:16:36 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 18:21:40 UTC 2023	running	job `835` is running
Nov 16 19:41:49 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-835.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1700163618.tar.gz` size: 165 MiB (173839578 bytes) entries: 9994 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:47:43 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1700163618.tar.gz` to S3 bucket succeeded

laraPPr · 2023-11-16T20:05:48Z

bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/generic

eessi-bot · 2023-11-16T20:05:51Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_n1 from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/generic from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/generic
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 836, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 837, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-11-16T20:05:55Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/836

date	job status	comment
Nov 16 20:05:54 UTC 2023	submitted	job id `836` awaits release by job manager
Nov 16 20:06:59 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 20:12:06 UTC 2023	running	job `836` is running
Nov 16 21:40:33 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-836.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1700170688.tar.gz` size: 165 MiB (173783625 bytes) entries: 9994 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:48:05 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1700170688.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-16T20:05:59Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/837

date	job status	comment
Nov 16 20:05:58 UTC 2023	submitted	job id `837` awaits release by job manager
Nov 16 20:06:55 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 20:12:03 UTC 2023	running	job `837` is running
Nov 16 21:40:31 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-837.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1700170688.tar.gz` size: 165 MiB (173833568 bytes) entries: 9994 modules under 2023.06/software/linux/aarch64/generic/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:48:27 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1700170688.tar.gz` to S3 bucket succeeded

boegel · 2023-11-16T21:20:09Z

@laraPPr easybuilders/easybuild-easyconfigs#19246 merged

laraPPr · 2023-11-16T21:45:33Z

bot: show-config

eessi-bot · 2023-11-16T21:45:37Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command show-config from laraPPr
- expanded format: show-config
handling command show-config failed with message
unknown command show-config; use bot: help for usage information

laraPPr · 2023-11-16T21:46:02Z

bot: show_config

eessi-bot · 2023-11-16T21:46:05Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command show_config from laraPPr
- expanded format: show_config
handling command show_config resulted in:
- added comment {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment) to show configuration

eessi-bot · 2023-11-16T21:46:07Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

laraPPr · 2023-11-16T21:48:03Z

bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/generic
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2023-11-16T21:48:06Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/generic from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/haswell from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/skylake_avx512 from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen2 from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3 from laraPPr
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 838, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 839, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 840, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 841, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 842, for details & status see {2023.06}[foss/2021b] LAMMPS 23Jun2022 #360 (comment)

eessi-bot · 2023-11-16T21:48:09Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/838

date	job status	comment
Nov 16 21:48:08 UTC 2023	submitted	job id `838` awaits release by job manager
Nov 16 21:48:45 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 21:49:56 UTC 2023	running	job `838` is running
Nov 16 23:29:23 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-838.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1700177235.tar.gz` size: 219 MiB (230525133 bytes) entries: 11378 modules under 2023.06/software/linux/x86_64/generic/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:45:49 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1700177235.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-16T21:48:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/839

date	job status	comment
Nov 16 21:48:14 UTC 2023	submitted	job id `839` awaits release by job manager
Nov 16 21:48:49 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 21:54:23 UTC 2023	running	job `839` is running
Nov 16 23:36:41 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-839.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1700177684.tar.gz` size: 221 MiB (232555781 bytes) entries: 11378 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:46:13 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1700177684.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-16T21:48:18Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/840

date	job status	comment
Nov 16 21:48:17 UTC 2023	submitted	job id `840` awaits release by job manager
Nov 16 21:48:52 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 21:55:38 UTC 2023	running	job `840` is running
Nov 16 23:21:41 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-840.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1700176803.tar.gz` size: 221 MiB (232347610 bytes) entries: 11378 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:46:58 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1700176803.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-16T21:48:22Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/841

date	job status	comment
Nov 16 21:48:21 UTC 2023	submitted	job id `841` awaits release by job manager
Nov 16 21:48:38 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 21:53:05 UTC 2023	running	job `841` is running
Nov 16 23:25:03 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-841.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1700177013.tar.gz` size: 220 MiB (231001200 bytes) entries: 11378 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:47:21 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1700177013.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-16T21:48:26Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_360/842

date	job status	comment
Nov 16 21:48:25 UTC 2023	submitted	job id `842` awaits release by job manager
Nov 16 21:48:41 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 16 21:53:09 UTC 2023	running	job `842` is running
Nov 16 23:14:40 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-842.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1700176357.tar.gz` size: 220 MiB (231101792 bytes) entries: 11378 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `archspec/0.1.3-GCCcore-11.2.0.lua` `kim-api/2.3.0-GCCcore-11.2.0.lua` `LAMMPS/23Jun2022-foss-2021b-kokkos.lua` `PLUMED/2.7.3-foss-2021b.lua` `ScaFaCoS/1.0.1-foss-2021b.lua` `tbb/2020.3-GCCcore-11.2.0.lua` `Voro++/0.4.6-GCCcore-11.2.0.lua` `VTK/9.1.0-foss-2021b.lua` `xxd/8.2.4220-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `archspec/0.1.3-GCCcore-11.2.0` `kim-api/2.3.0-GCCcore-11.2.0` `LAMMPS/23Jun2022-foss-2021b-kokkos` `PLUMED/2.7.3-foss-2021b` `ScaFaCoS/1.0.1-foss-2021b` `tbb/2020.3-GCCcore-11.2.0` `Voro++/0.4.6-GCCcore-11.2.0` `VTK/9.1.0-foss-2021b` `xxd/8.2.4220-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 17 10:46:35 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1700176357.tar.gz` to S3 bucket succeeded

bedroge

Lgtm, thanks for the effort in solving all the aarch64 issues @laraPPr!

…ate_tarball Modify create_tarball.sh to address changes under init

{2023.06}[foss/2021b] LAMMPS 23Jun2022

093c01d

trz42 added the pilot-2023.06 label Oct 11, 2023

lara added 2 commits October 13, 2023 13:57

Merge branch '2023.06' into LAMMPS_23Jun2022

d90db53

add TBB solution for Aarch64

6b0bcb9

add fix for sanity check

6d138dd

laraPPr added the ready-to-deploy Mark a PR as ready to deploy label Nov 16, 2023

boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Nov 17, 2023

bedroge approved these changes Nov 17, 2023

View reviewed changes

bedroge merged commit ba585ee into EESSI:2023.06 Nov 17, 2023
33 checks passed

laraPPr mentioned this pull request Nov 17, 2023

Failing build in LAMMPS due to tbb and ScaFaCoS on Aarch64 #384

Open

TopRichard pushed a commit to TopRichard/bot-software-layer1 that referenced this pull request May 8, 2024

Merge pull request EESSI#360 from TopRichard/nessi-2023.06-modify_cre…

48810af

…ate_tarball Modify create_tarball.sh to address changes under init

{2023.06}[foss/2021b] LAMMPS 23Jun2022 #360

{2023.06}[foss/2021b] LAMMPS 23Jun2022 #360

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eessi-bot bot commented Nov 16, 2023 •

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eessi-bot bot commented Nov 16, 2023 •

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eessi-bot bot commented Nov 16, 2023 •

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