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LAMMPS: Add 2Aug2023_update4 to zen4 hook #1910

LAMMPS: Add 2Aug2023_update4 to zen4 hook

LAMMPS: Add 2Aug2023_update4 to zen4 hook #1910

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Check for missing software installations in software.eessi.io
on:
push:
branches: [ "*-software.eessi.io" ]
pull_request:
workflow_dispatch:
permissions:
contents: read # to fetch code (actions/checkout)
env:
EESSI_ACCELERATOR_TARGETS: |
x86_64/amd/zen2:
- nvidia/cc80
x86_64/amd/zen3:
- nvidia/cc80
jobs:
check_missing:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
EESSI_VERSION:
- 2023.06
EESSI_SOFTWARE_SUBDIR_OVERRIDE:
- aarch64/generic
- aarch64/neoverse_n1
- aarch64/neoverse_v1
- x86_64/amd/zen2
- x86_64/amd/zen3
- x86_64/amd/zen4
- x86_64/intel/haswell
- x86_64/intel/skylake_avx512
- x86_64/generic
steps:
- name: Check out software-layer repository
uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1
- name: Mount EESSI CernVM-FS pilot repository
uses: cvmfs-contrib/github-action-cvmfs@55899ca74cf78ab874bdf47f5a804e47c198743c # v4.0
with:
cvmfs_config_package: https://github.com/EESSI/filesystem-layer/releases/download/latest/cvmfs-config-eessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: software.eessi.io
- name: Test check_missing_installations.sh script
run: |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
# set $EESSI_CPU_FAMILY to the CPU architecture that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE (part before the first slash),
# to prevent issues with checks in the Easybuild configuration that use this variable
export EESSI_CPU_FAMILY=${EESSI_SOFTWARE_SUBDIR_OVERRIDE%%/*}
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
env | grep ^EESSI | sort
# first check the CPU-only builds for this CPU target
echo "just run check_missing_installations.sh (should use easystacks/software.eessi.io/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-*.yml with latest EasyBuild release)"
for easystack_file in $(EESSI_VERSION=${{matrix.EESSI_VERSION}} .github/workflows/scripts/only_latest_easystacks.sh); do
if [ ${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}} = "x86_64/amd/zen4" ]; then
if grep -q 2022b <<<"${easystack_file}"; then
# skip the check of installed software on zen4 for foss/2022b builds
continue
fi
if [[ $easystack_file == *"rebuilds"* ]]; then
# Also handle rebuilds, make a temporary EasyStack file where we clean out all 2022b stuff and use that
new_easystack=$(mktemp pruned_easystackXXX --suffix=.yml)
# first clean out the options then clean out the .eb name
sed '/2022b\|12\.2\.0/,/\.eb/{/\.eb/!d}' "${easystack_file}" | sed '/2022b\|12\.2\.0/d' > $new_easystack
diff --unified=0 "$easystack_file" "$new_easystack" || :
easystack_file="$new_easystack"
fi
fi
echo "check missing installations for ${easystack_file}..."
./check_missing_installations.sh ${easystack_file}
ec=$?
if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
done
# now check the accelerator builds for this CPU target
accelerators=$(echo "${EESSI_ACCELERATOR_TARGETS}" | yq ".${EESSI_SOFTWARE_SUBDIR_OVERRIDE}[]")
if [ -z ${accelerators} ]; then
echo "no accelerator targets defined for ${EESSI_SOFTWARE_SUBDIR_OVERRIDE}"
else
for accel in ${accelerators}; do
module use ${EESSI_SOFTWARE_PATH}/accel/${accel}/modules/all
echo "checking missing installations for accelerator ${accel} using modulepath: ${MODULEPATH}"
for easystack_file in $(EESSI_VERSION=${{matrix.EESSI_VERSION}} ACCEL_EASYSTACKS=1 .github/workflows/scripts/only_latest_easystacks.sh); do
echo "check missing installations for ${easystack_file}..."
./check_missing_installations.sh ${easystack_file}
ec=$?
if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
done
module unuse ${EESSI_SOFTWARE_PATH}/accel/${accel}/modules/all
done
fi
- name: Test check_missing_installations.sh with missing package (GCC/8.3.0)
run: |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}/init/bash
# set $EESSI_CPU_FAMILY to the CPU architecture that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE (part before the first slash),
# to prevent issues with checks in the Easybuild configuration that use this variable
export EESSI_CPU_FAMILY=${EESSI_SOFTWARE_SUBDIR_OVERRIDE%%/*}
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/software.eessi.io/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
env | grep ^EESSI | sort
# create dummy easystack file with a single entry (something that is not installed in EESSI)
easystack_file="test.yml"
echo "easyconfigs:" > ${easystack_file}
echo " - GCC-8.3.0:" >> ${easystack_file}
echo "created easystack file '${easystack_file}' with a missing installation (GCC/8.3.0):"
cat ${easystack_file}
# note, check_missing_installations.sh exits 1 if a package was
# missing, which is intepreted as false (exit code based, not
# boolean logic), hence when the script exits 0 if no package was
# missing it is interpreted as true, thus the test did not capture
# the missing package
if ./check_missing_installations.sh ${easystack_file}; then
echo "did NOT capture missing package; test FAILED"
exit 1
else
echo "captured missing package; test PASSED"
exit 0
fi