Polaris: PHDF5

The Cray module and the regular HDF5 module seem to be both broken for us in Polaris. Let's just build our own as we do on LUMI.
ECP-WarpX · Oct 9, 2024 · 925abef · 925abef
1 parent 27181aa
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diff --git a/Tools/machines/polaris-alcf/install_gpu_dependencies.sh b/Tools/machines/polaris-alcf/install_gpu_dependencies.sh
@@ -45,6 +45,25 @@ cmake -S $HOME/src/c-blosc -B $HOME/src/c-blosc-pm-gpu-build -DBUILD_TESTS=OFF -
 cmake --build $HOME/src/c-blosc-pm-gpu-build --target install --parallel 16
 rm -rf $HOME/src/c-blosc-pm-gpu-build
 
+# HDF5 (for openPMD)
+if [ -d $HOME/src/hdf5 ]
+then
+ cd $HOME/src/hdf5
+ git fetch --prune
+ git checkout hdf5-1_14_1-2
+ cd -
+else
+ git clone -b hdf5-1_14_1-2 https://github.com/HDFGroup/hdf5.git $HOME/src/hdf5
+fi
+rm -rf $HOME/src/hdf5-build
+cmake -S $HOME/src/hdf5 \
+ -B $HOME/src/hdf5-build \
+ -DBUILD_TESTING=OFF \
+ -DHDF5_ENABLE_PARALLEL=ON \
+ -DCMAKE_INSTALL_PREFIX=${SW_DIR}/hdf5-1.14.1.2
+cmake --build $HOME/src/hdf5-build --target install --parallel 10
+rm -rf $HOME/src/hdf5-build
+
 # ADIOS2
 if [ -d $HOME/src/adios2 ]
 then

diff --git a/Tools/machines/polaris-alcf/polaris_gpu_warpx.profile.example b/Tools/machines/polaris-alcf/polaris_gpu_warpx.profile.example
@@ -22,15 +22,18 @@ module load boost
 # optional: for openPMD and PSATD+RZ support
 module load hdf5/1.14.3
 export CMAKE_PREFIX_PATH=/home/${USER}/sw/polaris/gpu/c-blosc-1.21.1:$CMAKE_PREFIX_PATH
+export CMAKE_PREFIX_PATH=/home/${USER}/sw/polaris/gpu/hdf5-1.14.1.2:$CMAKE_PREFIX_PATH
 export CMAKE_PREFIX_PATH=/home/${USER}/sw/polaris/gpu/adios2-2.8.3:$CMAKE_PREFIX_PATH
 export CMAKE_PREFIX_PATH=/home/${USER}/sw/polaris/gpu/blaspp-2024.05.31:$CMAKE_PREFIX_PATH
 export CMAKE_PREFIX_PATH=/home/${USER}/sw/polaris/gpu/lapackpp-2024.05.31:$CMAKE_PREFIX_PATH
 
 export LD_LIBRARY_PATH=/home/${USER}/sw/polaris/gpu/c-blosc-1.21.1/lib64:$LD_LIBRARY_PATH
+export LD_LIBRARY_PATH=/home/${USER}/sw/polaris/gpu/hdf5-1.14.1.2/lib64:$LD_LIBRARY_PATH
 export LD_LIBRARY_PATH=/home/${USER}/sw/polaris/gpu/adios2-2.8.3/lib64:$LD_LIBRARY_PATH
 export LD_LIBRARY_PATH=/home/${USER}/sw/polaris/gpu/blaspp-2024.05.31/lib64:$LD_LIBRARY_PATH
 export LD_LIBRARY_PATH=/home/${USER}/sw/polaris/gpu/lapackpp-2024.05.31/lib64:$LD_LIBRARY_PATH
 
+export PATH=/home/${USER}/sw/polaris/gpu/hdf5-1.14.1.2/bin:${PATH}
 export PATH=/home/${USER}/sw/polaris/gpu/adios2-2.8.3/bin:${PATH}
 
 # optional: for Python bindings or libEnsemble