Make eva-pipeline use classes of variation-commons #148
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…asses from variation-commons-core
JDalio
changed the title
conf/storage-mongodb.properties
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| #Variant | |||
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Please do not include IP address or any other credentials/sensitive information in properties files.
examples/application.properties
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| # EXECUTION PROFILE | |||
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This is trying to fix issue#147
Erase all classes in commons/models, mappings are in map.txt
Add dependency on classes from commons-variations
Remove dependency on org.opencb.biodata.formats.variant.vcf4.io.VariantVcfReader and rebuild VcfHeaderReader
Build passed
Could run job load-genotyped-vcf to load variations and build homo_sapiens_variants collection successfully, however the files collection failed. run-log.txt
Correct a couple of tests. As of now test run failed with 58 errors, I am trying to fix them