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Remove any project that does not have an assembly #12

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Remove any project that does not have an assembly #12

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2 changes: 1 addition & 1 deletion eva_assembly_ingestion/assembly_ingestion_job.py
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Original file line number Diff line number Diff line change
Expand Up @@ -138,7 +138,7 @@ def get_source_assemblies_and_projects(self):
f"LEFT OUTER JOIN evapro.project_analysis USING (project_accession) "
f"LEFT OUTER JOIN evapro.analysis USING (analysis_accession) "
f"WHERE taxonomy_id in ({', '.join([str(t) for t in self.taxonomies])}) "
f"AND ena_status=4 AND hidden_in_eva=0 "
f"AND ena_status=4 AND hidden_in_eva=0 AND vcf_reference_accession IS NOT NULL "
f"GROUP BY vcf_reference_accession, taxonomy_id"
)
return get_all_results_for_query(pg_conn, query)
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