ESHG 2024 Workshop: Software tools for the sharing & use of GWAS summary statistics and polygenic scores
This repository contains training materials for the European Human Genetics Conference (ESHG) 2024 workshop "Software tools for the sharing & use of GWAS summary statistics and polygenic scores".
The workshop had four sections. See below for slides, data, and code examples for each section:
- The GWAS Catalog: overview of the resource, and how to submit summary statistics
- Accessing GWAS Catalog summary statistics
- The PGS Catalog: overview of the resource, and how to submit scoring files and metadata
- pgsc_calc - a reproducible workflow for calculating PGS
| I’m interested in | I want to | Where to get help |
|---|---|---|
| GWAS Catalog | Learn more | https://www.ebi.ac.uk/gwas/docs & https://www.ebi.ac.uk/gwas/docs/related-resources |
| Submit data | https://www.ebi.ac.uk/gwas/deposition/ | |
| Get help with submission | [email protected] | |
| Ask a general question | [email protected] | |
| PGS Catalog | Learn more | https://www.pgscatalog.org/about/ |
| Submit data or ask a question | [email protected] | |
| PGS Catalog Calculator | Learn more | https://pgsc-calc.readthedocs.io/en/latest/ |
| Ask a question or get help | https://github.com/PGScatalog/pgsc_calc |
This work is licensed under CC BY 4.0.