enable eamxx docs + add pyscream docs #15
Workflow file for this run
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| name: eamxx-v1 | |
| on: | |
| # Runs on PRs against master | |
| pull_request: | |
| branches: [ master ] | |
| types: [opened, synchronize, ready_for_review, reopened] | |
| # Manual run is used to bless | |
| workflow_dispatch: | |
| inputs: | |
| job_to_run: | |
| description: 'Job to run' | |
| required: true | |
| type: choice | |
| options: | |
| - cpu-gcc | |
| - all | |
| bless: | |
| description: 'Generate baselines' | |
| required: true | |
| type: boolean | |
| concurrency: | |
| # Two runs are in the same group if they are testing the same git ref | |
| # - if trigger=pull_request, the ref is refs/pull/<PR_NUMBER>/merge | |
| # - for other triggers, the ref is the branch tested | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre_process_pr: | |
| if: ${{ github.event_name == 'pull_request' }} | |
| runs-on: ubuntu-latest # This job can run anywhere | |
| outputs: | |
| relevant_paths: ${{ steps.check_paths.outputs.value }} | |
| labels: ${{ steps.get_labels.outputs.labels }} | |
| steps: | |
| - id: check_paths | |
| run: | | |
| paths=( | |
| components/eamxx | |
| components/eam/src/physics/rrtmgp | |
| components/eam/src/physics/p3/scream | |
| components/eam/src/physics/cam | |
| components/eam/src/physics/rrtmgp/external | |
| externals/ekat | |
| externals/scorpio | |
| externals/haero | |
| externals/YAKL | |
| .github/workflows/eamxx-v1-testing.yml | |
| ) | |
| pattern=$(IFS=\|; echo "${paths[*]}") | |
| # Use the GitHub API to get the list of changed files | |
| response=$(curl -s -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \ | |
| "https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.number }}/files") | |
| changed_files=$(echo "$response" | grep -o '"filename": *"[^"]*"' | sed 's/"filename": *//; s/"//g') | |
| # Check for matches and echo the matching files (or "" if none) | |
| matching_files=$(echo "$changed_files" | grep -E "^($pattern)" || echo "") | |
| if [[ -n "$matching_files" ]]; then | |
| echo "Found relevant files: $matching_files" | |
| echo "value=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "No relevant files touched by this PR." | |
| echo "value=false" >> $GITHUB_OUTPUT | |
| fi | |
| - id: get_labels | |
| run: | | |
| labels="${{ join(github.event.pull_request.labels.*.name, ',') }}" | |
| echo "labels=${labels}" >> $GITHUB_OUTPUT | |
| cpu-gcc: | |
| needs: [pre_process_pr] | |
| if: | | |
| github.event_name == 'schedule' || | |
| ( | |
| github.event_name == 'pull_request' && | |
| needs.pre_process_pr.outputs.relevant_paths=='true' && | |
| !contains(needs.pre_process_pr.outputs.labels,'CI: skip gcc') && | |
| !contains(needs.pre_process_pr.outputs.labels,'CI: skip eamxx-v1') && | |
| !contains(needs.pre_process_pr.outputs.labels,'CI: skip eamxx-all') | |
| ) || ( | |
| github.event_name == 'workflow_dispatch' && | |
| github.event.inputs.job_to_run == 'cpu-gcc' || | |
| github.event.inputs.job_to_run == 'all' | |
| ) | |
| runs-on: [self-hosted, gcc, ghci-snl-cpu] | |
| strategy: | |
| matrix: | |
| test: | |
| - full_name: ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.ghci-snl-cpu_gnu.scream-output-preset-2 | |
| short_name: ERS_Ln9.ne4_ne4.F2000-SCREAMv1-AQP1.scream-output-preset-2 | |
| - full_name: ERS_P16_Ln22.ne30pg2_ne30pg2.FIOP-SCREAMv1-DP.ghci-snl-cpu_gnu.scream-dpxx-arm97 | |
| short_name: ERS_P16_Ln22.ne30pg2_ne30pg2.FIOP-SCREAMv1-DP.scream-dpxx-arm97 | |
| - full_name: ERS_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.ghci-snl-cpu_gnu.scream-small_kernels--scream-output-preset-5 | |
| short_name: ERS_Ln22.ne4pg2_ne4pg2.F2010-SCREAMv1.scream-small_kernels--scream-output-preset-5 | |
| - full_name: SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.ghci-snl-cpu_gnu.scream-mam4xx-all_mam4xx_procs | |
| short_name: SMS_D_Ln5.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.scream-mam4xx-all_mam4xx_procs | |
| fail-fast: false | |
| name: cpu-gcc / ${{ matrix.test.short_name }} | |
| steps: | |
| - name: Check out the repository | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| show-progress: false | |
| submodules: recursive | |
| - name: Show action trigger | |
| uses: ./.github/actions/show-workflow-trigger | |
| - name: Set CA certificates env var | |
| run: | | |
| # Ensure the operating system is Linux | |
| if [ "$(uname)" != "Linux" ]; then | |
| echo "This action only supports Linux." | |
| exit 1 | |
| fi | |
| # Set env var to be used in upload-artifacts phase | |
| if [ -f /etc/debian_version ]; then | |
| echo "NODE_EXTRA_CA_CERTS=/etc/ssl/certs/ca-certificates.crt" >> $GITHUB_ENV | |
| elif [ -f /etc/redhat-release ] || [ -f /etc/centos-release ] || [ -f /etc/fedora-release ]; then | |
| echo "NODE_EXTRA_CA_CERTS=/etc/pki/tls/certs/ca-bundle.crt" >> $GITHUB_ENV | |
| else | |
| echo "Unsupported Linux distribution" | |
| exit 1 | |
| fi | |
| - name: Establish cmp/gen flag | |
| run: | | |
| dir_suffix=".C" | |
| cmp_gen_flag="-c" | |
| if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then | |
| if [ ${{ inputs.bless }} ]; then | |
| cmp_gen_flag="-o -g" | |
| dir_suffix=".G" | |
| fi | |
| fi | |
| echo "flags=$cmp_gen_flag -b master" >> $GITHUB_ENV | |
| echo "folder_suffix=$dir_suffix" >> $GITHUB_ENV | |
| - name: Run test | |
| run: | | |
| ./cime/scripts/create_test ${{ matrix.test.full_name }} ${{ env.flags }} --wait | |
| - name: Upload case files | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.test.full_name }} | |
| path: | | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/TestStatus.log | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/bld/*.bldlog.* | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/bld/case2bld/*.bldlog.* | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/*.log.* | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/case2run/*.log.* | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/*.cprnc.out | |
| /projects/e3sm/scratch/${{ matrix.test.full_name }}${{ env.folder_suffix }}*/run/case2run/*.cprnc.out | |
| env: | |
| NODE_EXTRA_CA_CERTS: ${{ env.NODE_EXTRA_CA_CERTS }} | |
| - name: Clean up | |
| if: ${{ always() }} | |
| run: | | |
| rm -rf /projects/e3sm/scratch/${{ matrix.test.full_name }}* |