Bugfix

Donders-Institute · Jun 24, 2024 · 77718b6 · 77718b6
1 parent ee81082
commit 77718b6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bidscoin/bidsapps/slicereport.py b/bidscoin/bidsapps/slicereport.py
@@ -126,7 +126,7 @@ def slicer_append(inputimage: Path, operations: str, outlineimage: Path, mainopt
             jt.nativeSpecification = drmaa_nativespec(cluster, pbatch)
             jt.joinFiles           = True
             jt.jobName             = 'slicereport'
-            jt.outputPath          = f"{os.getenv('HOSTNAME')}:{workdir}/{jt.jobName}.out"
+            jt.outputPath          = f"{os.getenv('HOSTNAME')}:{workdir if DEBUG else tempfile.gettempdir()}/{jt.jobName}.out"
             jobid                  = pbatch.runJob(jt)
             pbatch.deleteJobTemplate(jt)
             LOGGER.info(f"Your slicereport job has been submitted with ID: {jobid}")