v0.1.3

Various bug fixes, and small improvements.

What's Changed

• Fix R and python script paths by @crichgriffin in #14
• these changes to pipeline_vis got lost in the restructure by @crichgriffin in #16
• Improved comments and logging by @crichgriffin in #17
• [clustering] Missing script! by @crichgriffin in #19
• batch correct merge fix by @crichgriffin in #20
• Fix pyproject.toml and upgrades to documentation by @crichgriffin in #22
• remove github installs by @crichgriffin in #23
• update requirements file by @crichgriffin in #24
• Fixes #18 by @crichgriffin in #26
• [integration] Fixes the error where umaps don't plot because there are too many categories by @crichgriffin in #27
• Implement batch key argument in sc.pp.highly_variable_genes by @crichgriffin in #28
• barcode metadata df shouldnt be used for bg concat by @deevdevil88 in #29
• Update installation_rescomp.md by @crichgriffin in #30
• Update pipeline.yml by @crichgriffin in #31
• minor code fix by @deevdevil88 in #32
• Brining tenx metrics aggregation and plotting back by @crichgriffin in #33
• [QC_MM] Multiple different ADT libraries by @crichgriffin in #34
• add bbknn for prot, by @crichgriffin in #35

Full Changelog: 0.1.2...0.1.3