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B-Dalmijn authored and B-Dalmijn committed Jul 27, 2023
1 parent 0a6cd73 commit 73a25c3
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Showing 49 changed files with 1,116 additions and 988 deletions.
497 changes: 233 additions & 264 deletions dev/_examples/build_model.html
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506 changes: 253 additions & 253 deletions dev/_examples/build_sediment.html
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58 changes: 29 additions & 29 deletions dev/_examples/clip_model.html
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Expand Up @@ -541,35 +541,35 @@ <h2>Clip a small sub-basin<a class="headerlink" href="#Clip-a-small-sub-basin" t
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
2023-07-25 13:35:50,282 - clip - log - INFO - HydroMT version: 0.8.1.dev0
2023-07-25 13:35:50,282 - clip - main - INFO - Clipping instance of wflow model.
2023-07-25 13:35:50,282 - clip - main - INFO - Region: {&#39;subbasin&#39;: [12.3006, 46.4324], &#39;wflow_streamorder&#39;: 4}
2023-07-25 13:35:50,304 - clip - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
2023-07-25 13:35:50,304 - clip - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
2023-07-25 13:35:50,318 - clip - main - INFO - Reading model to clip
2023-07-25 13:35:50,320 - clip - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
2023-07-25 13:35:50,443 - clip - wflow - INFO - Reading model intbl files.
2023-07-25 13:35:50,444 - clip - wflow - INFO - Reading model table files.
2023-07-25 13:35:50,444 - clip - wflow - INFO - Reading model staticgeom files.
2023-07-25 13:35:50,589 - clip - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
2023-07-25 13:35:50,605 - clip - wflow - INFO - Model read
2023-07-25 13:35:50,606 - clip - main - INFO - Clipping staticmaps
2023-07-25 13:35:54,128 - clip - basin_mask - INFO - subbasin bbox: [12.0083, 46.3417, 12.3250, 46.6750]
2023-07-25 13:35:54,741 - clip - model_api - WARNING - Replacing geom: basins
2023-07-25 13:35:55,845 - clip - model_api - WARNING - Replacing geom: rivers
2023-07-25 13:35:55,846 - clip - wflow - INFO - Reading model table files.
2023-07-25 13:35:55,847 - clip - main - INFO - Clipping forcing
2023-07-25 13:35:55,847 - clip - wflow - INFO - Clipping NetCDF forcing..
2023-07-25 13:35:55,852 - clip - model_api - WARNING - Replacing forcing: precip
2023-07-25 13:35:55,853 - clip - model_api - WARNING - Replacing forcing: pet
2023-07-25 13:35:55,853 - clip - model_api - WARNING - Replacing forcing: temp
2023-07-25 13:35:55,853 - clip - main - INFO - Writting clipped model
2023-07-25 13:35:55,853 - clip - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip
2023-07-25 13:35:55,853 - clip - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/wflow_sbm.toml
2023-07-25 13:35:55,952 - clip - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/staticmaps.nc
2023-07-25 13:35:56,290 - clip - wflow - INFO - Write forcing file
2023-07-25 13:35:56,311 - clip - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/inmaps.nc
[########################################] | 100% Completed | 101.48 ms
2023-07-27 08:06:15,914 - clip - log - INFO - HydroMT version: 0.8.1.dev0
2023-07-27 08:06:15,915 - clip - main - INFO - Clipping instance of wflow model.
2023-07-27 08:06:15,915 - clip - main - INFO - Region: {&#39;subbasin&#39;: [12.3006, 46.4324], &#39;wflow_streamorder&#39;: 4}
2023-07-27 08:06:15,936 - clip - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
2023-07-27 08:06:15,936 - clip - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
2023-07-27 08:06:15,950 - clip - main - INFO - Reading model to clip
2023-07-27 08:06:15,952 - clip - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
2023-07-27 08:06:16,075 - clip - wflow - INFO - Reading model intbl files.
2023-07-27 08:06:16,075 - clip - wflow - INFO - Reading model table files.
2023-07-27 08:06:16,076 - clip - wflow - INFO - Reading model staticgeom files.
2023-07-27 08:06:16,218 - clip - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
2023-07-27 08:06:16,235 - clip - wflow - INFO - Model read
2023-07-27 08:06:16,235 - clip - main - INFO - Clipping staticmaps
2023-07-27 08:06:19,653 - clip - basin_mask - INFO - subbasin bbox: [12.0083, 46.3417, 12.3250, 46.6750]
2023-07-27 08:06:20,256 - clip - model_api - WARNING - Replacing geom: basins
2023-07-27 08:06:21,357 - clip - model_api - WARNING - Replacing geom: rivers
2023-07-27 08:06:21,358 - clip - wflow - INFO - Reading model table files.
2023-07-27 08:06:21,359 - clip - main - INFO - Clipping forcing
2023-07-27 08:06:21,359 - clip - wflow - INFO - Clipping NetCDF forcing..
2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: precip
2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: pet
2023-07-27 08:06:21,365 - clip - model_api - WARNING - Replacing forcing: temp
2023-07-27 08:06:21,365 - clip - main - INFO - Writting clipped model
2023-07-27 08:06:21,365 - clip - wflow - INFO - Write model data to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip
2023-07-27 08:06:21,365 - clip - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/wflow_sbm.toml
2023-07-27 08:06:21,464 - clip - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/staticmaps.nc
2023-07-27 08:06:21,801 - clip - wflow - INFO - Write forcing file
2023-07-27 08:06:21,821 - clip - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_test_clip/inmaps.nc
[########################################] | 100% Completed | 101.52 ms
malloc(): mismatching next-&gt;prev_size (unsorted)
Aborted (core dumped)
</pre></div></div>
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10 changes: 5 additions & 5 deletions dev/_examples/plot_wflow_results.html
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94 changes: 47 additions & 47 deletions dev/_examples/update_model_forcing.html
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Expand Up @@ -619,53 +619,53 @@ <h2>Update Wflow forcing layers<a class="headerlink" href="#Update-Wflow-forcing
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
2023-07-25 13:36:54,166 - update - log - INFO - HydroMT version: 0.8.1.dev0
2023-07-25 13:36:54,166 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
2023-07-25 13:36:54,166 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing
2023-07-25 13:36:54,166 - update - main - INFO - User settings:
2023-07-25 13:36:54,244 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
2023-07-25 13:36:54,245 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
2023-07-25 13:36:54,321 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
2023-07-25 13:36:54,321 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
2023-07-25 13:36:54,337 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
2023-07-25 13:36:54,458 - update - wflow - INFO - Reading model intbl files.
2023-07-25 13:36:54,459 - update - wflow - INFO - Reading model table files.
2023-07-25 13:36:54,459 - update - wflow - INFO - Reading model staticgeom files.
2023-07-25 13:36:54,601 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
2023-07-25 13:36:54,618 - update - wflow - INFO - Model read
2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.precip_fn: chirps_global
2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
2023-07-25 13:36:54,623 - update - model_api - INFO - setup_precip_forcing.chunksize: None
2023-07-25 13:36:54,627 - update - data_catalog - INFO - DataCatalog: Getting chirps_global RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/chirps_global.nc
2023-07-25 13:36:54,723 - update - model_api - WARNING - Replacing forcing: precip
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.press_correction: True
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
2023-07-25 13:36:54,723 - update - model_api - INFO - setup_temp_pet_forcing.chunksize: None
2023-07-25 13:36:54,728 - update - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
2023-07-25 13:36:54,784 - update - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
2023-07-25 13:36:55,042 - update - model_api - WARNING - Replacing forcing: pet
2023-07-25 13:36:55,044 - update - model_api - WARNING - Replacing forcing: temp
2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.fn_out: None
2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.freq_out: M
2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.chunksize: 1
2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.decimals: 2
2023-07-25 13:36:55,044 - update - model_api - INFO - write_forcing.time_units: days since 1900-01-01T00:00:00
2023-07-25 13:36:55,044 - update - wflow - INFO - Write forcing file
2023-07-25 13:36:55,052 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
2023-07-25 13:36:55,052 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
2023-07-25 13:36:55,075 - update - wflow - INFO - Writting several forcing with freq M
2023-07-25 13:36:55,076 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
2023-07-25 13:36:55,086 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/inmaps-chirps_20100202.nc
[########################################] | 100% Completed | 102.27 ms
2023-07-25 13:36:55,585 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/staticmaps.nc
2023-07-25 13:36:55,854 - update - wflow - INFO - Writing model staticgeom to file.
2023-07-27 08:07:18,673 - update - log - INFO - HydroMT version: 0.8.1.dev0
2023-07-27 08:07:18,674 - update - main - INFO - Updating wflow model at /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin (r).
2023-07-27 08:07:18,674 - update - main - INFO - Output dir: /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing
2023-07-27 08:07:18,674 - update - main - INFO - User settings:
2023-07-27 08:07:18,739 - update - data_catalog - INFO - Reading data catalog artifact_data v0.0.8 from archive
2023-07-27 08:07:18,740 - update - data_catalog - INFO - Parsing data catalog from /home/runner/.hydromt_data/artifact_data/v0.0.8/data_catalog.yml
2023-07-27 08:07:18,815 - update - model_api - INFO - Initializing wflow model from hydromt_wflow (v0.2.2.dev0).
2023-07-27 08:07:18,815 - update - data_catalog - INFO - Parsing data catalog from /usr/share/miniconda3/envs/hydromt-wflow/lib/python3.9/site-packages/hydromt_wflow/data/parameters_data.yml
2023-07-27 08:07:18,831 - update - wflow - INFO - Read staticmaps from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/staticmaps.nc
2023-07-27 08:07:18,954 - update - wflow - INFO - Reading model intbl files.
2023-07-27 08:07:18,955 - update - wflow - INFO - Reading model table files.
2023-07-27 08:07:18,955 - update - wflow - INFO - Reading model staticgeom files.
2023-07-27 08:07:19,097 - update - wflow - INFO - Read forcing from /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_subbasin/inmaps.nc
2023-07-27 08:07:19,114 - update - wflow - INFO - Model read
2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.precip_fn: chirps_global
2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.precip_clim_fn: None
2023-07-27 08:07:19,119 - update - model_api - INFO - setup_precip_forcing.chunksize: None
2023-07-27 08:07:19,123 - update - data_catalog - INFO - DataCatalog: Getting chirps_global RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/chirps_global.nc
2023-07-27 08:07:19,218 - update - model_api - WARNING - Replacing forcing: precip
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.temp_pet_fn: era5
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.pet_method: debruin
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.press_correction: True
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.temp_correction: True
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.wind_correction: True
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.wind_altitude: 10
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.reproj_method: nearest_index
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.dem_forcing_fn: era5_orography
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.skip_pet: False
2023-07-27 08:07:19,218 - update - model_api - INFO - setup_temp_pet_forcing.chunksize: None
2023-07-27 08:07:19,223 - update - data_catalog - INFO - DataCatalog: Getting era5 RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5.nc
2023-07-27 08:07:19,280 - update - data_catalog - INFO - DataCatalog: Getting era5_orography RasterDataset netcdf data from /home/runner/.hydromt_data/artifact_data/v0.0.8/era5_orography.nc
2023-07-27 08:07:19,536 - update - model_api - WARNING - Replacing forcing: pet
2023-07-27 08:07:19,538 - update - model_api - WARNING - Replacing forcing: temp
2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.fn_out: None
2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.freq_out: M
2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.chunksize: 1
2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.decimals: 2
2023-07-27 08:07:19,539 - update - model_api - INFO - write_forcing.time_units: days since 1900-01-01T00:00:00
2023-07-27 08:07:19,539 - update - wflow - INFO - Write forcing file
2023-07-27 08:07:19,546 - update - wflow - WARNING - Not all dates found in precip_fn changing starttime to 2010-02-02 00:00:00 and endtime to 2010-02-10 00:00:00 in the toml.
2023-07-27 08:07:19,547 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
2023-07-27 08:07:19,569 - update - wflow - INFO - Writting several forcing with freq M
2023-07-27 08:07:19,569 - update - model_api - INFO - Writing model config to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/wflow_sbm.toml
2023-07-27 08:07:19,577 - update - wflow - INFO - Process forcing; saving to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/inmaps-chirps_20100202.nc
[########################################] | 100% Completed | 102.92 ms
2023-07-27 08:07:20,078 - update - wflow - INFO - Write staticmaps to /home/runner/work/hydromt_wflow/hydromt_wflow/docs/_examples/wflow_piave_forcing/staticmaps.nc
2023-07-27 08:07:20,347 - update - wflow - INFO - Writing model staticgeom to file.
malloc(): unsorted double linked list corrupted
Aborted (core dumped)
</pre></div></div>
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