Added some workflow stuff, ported make_env.py, in progres...

.github/ISSUE_TEMPLATE/bug_report.yaml

@@ -0,0 +1,49 @@
+---
+name: Bug Report
+description: Report incorrect behavior in the HydroMT library
+labels: [Bug, Needs refinement]
+
+body:
+  - type: checkboxes
+    id: checks
+    attributes:
+      label: HydroMT version checks
+      options:
+        - label: I have checked that this issue has not already been reported.
+          required: true
+        - label: I have checked that this bug exists on the latest version of HydroMT.
+          required: true
+  - type: textarea
+    id: example
+    attributes:
+      description: >
+        Please provide a minimal, copy-pastable example or a link to a public repository that reproduces the behavior. If providing a copy pastable example,
+        you may assume your in a clean up to date version of hydromt with a python enviroment active. In the case of a repository, ensure the repository
+        has a README.md which includes intructions to reproduce the behaviour.
+      label: Reproducible Example
+    validations:
+      required: true
+  - type: textarea
+    id: current-behaviour
+    attributes:
+      description: >
+        Please provide a description of the incorrect behaviour shown in the reproducible example
+      label: Current behaviour
+    validations:
+      required: true
+  - type: textarea
+    id: expected-behaviour
+    attributes:
+      description: >
+        Please provide a description of what you think the behaviour should be
+      label: Desired behaviour
+    validations:
+      required: true
+  - type: textarea
+    id: additional
+    attributes:
+      description: >
+        Please add any other context about the bug here
+      label: Additional context
+    validations:
+      required: false

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,7 @@
+---
+
+blank_issues_enabled: false
+contact_links:
+  - name: Ask a question
+    url: https://github.com/Deltares/hydromt/discussions
+    about: Ask questions and discuss with other community members

.github/ISSUE_TEMPLATE/documentation_improvement.yaml

@@ -0,0 +1,45 @@
+---
+name: Documentation Improvement
+description: Report wrong or missing documentation
+labels: [Documentation, Needs refinement]
+
+body:
+  - type: checkboxes
+    attributes:
+      label: HydroMT version checks
+      options:
+        - label: >
+            I have checked that the issue still exists on the latest versions of the docs
+            on `main` [here](https://github.com/Deltares/hydromt)
+          required: true
+  - type: dropdown
+    id: kind
+    attributes:
+      description: What kind of documentation issue is this?
+      label: Kind of issue
+      options:
+        - Docs are wrong
+        - Docs are unclear
+        - Docs are missing
+    validations:
+      required: true
+  - type: textarea
+    id: location
+    attributes:
+      description: >
+        If the docs are wrong or unclear please provide the URL of the documentation in question
+      label: Location of the documentation
+  - type: textarea
+    id: problem
+    attributes:
+      description: >
+        Please provide a description of the documentation problem
+      label: Documentation problem
+    validations:
+      required: true
+  - type: textarea
+    id: suggested-fix
+    attributes:
+      description: >
+        Please explain your suggested fix and why it's better than the existing documentation
+      label: Suggested fix for documentation

.github/ISSUE_TEMPLATE/feature_request.yaml

@@ -0,0 +1,35 @@
+---
+name: Feature Request
+description: Suggest an idea/enhancement for HydroMT
+labels: [Enhancement, Needs refinement]
+
+body:
+  - type: dropdown
+    id: checks
+    attributes:
+      description: What kind of feature request is this?
+      label: Kind of request
+      options:
+        - Adding new functionality
+        - Changing existing functionality
+        - Removing existing functionality
+  - type: textarea
+    id: description
+    attributes:
+      description: >
+        Please provide a clear and concise description of the feature you're requesting
+      label: Enhancement Description
+    validations:
+      required: true
+  - type: textarea
+    id: use-case
+    attributes:
+      description: >
+        Please describe a situation in which this feature would be useful to you, with code or cli examples if possible
+      label: Use case
+  - type: textarea
+    id: context
+    attributes:
+      description: >
+        Please add any other context about the enhancement here
+      label: Additional Context

.github/pull_request_template.md

@@ -0,0 +1,14 @@
+## Issue addressed
+Fixes #<issue number>
+
+## Explanation
+Explain how you addressed the bug/feature request, what choices you made and why.
+
+## Checklist
+- [ ] Updated tests or added new tests
+- [ ] Branch is up to date with `main`
+- [ ] Tests & pre-commit hooks pass
+- [ ] Updated documentation if needed
+
+## Additional Notes (optional)
+Add any additional notes or information that may be helpful.

.gitignore

@@ -8,6 +8,9 @@ __pycache__/
 *.py[cod]
 *$py.class
 
+# Temporary files
+tmp/
+
 # C extensions
 *.so
 
@@ -109,6 +112,7 @@ venv/
 ENV/
 env.bak/
 venv.bak/
+environment.yml
 
 # Spyder project settings
 .spyderproject

make_env.py

@@ -0,0 +1,113 @@
+"""A simple script to generate enviroment.yml files from pyproject.toml."""
+
+import argparse
+import re
+from sys import version_info
+from typing import List
+
+if version_info.minor >= 11:
+    from tomllib import load
+else:
+    from tomli import load
+
+
+# our quick and dirty implementation of recursive depedencies
+def _parse_profile(profile_str: str, opt_deps: dict, project_name: str) -> List[str]:
+    if profile_str is None or profile_str == "":
+        return []
+
+    pat = re.compile(r"\s*" + project_name + r"\[(.*)\]\s*")
+    parsed = []
+    queue = [f"{project_name}[{x.strip()}]" for x in profile_str.split(",")]
+    while len(queue) > 0:
+        dep = queue.pop(0)
+        if dep == "":
+            continue
+        m = pat.match(dep)
+        if m:
+            # if we match the patern, all list elts have to be dependenciy groups
+            dep_groups = [d.strip() for d in m.groups(0)[0].split(",")]
+            unknown_dep_groups = set(dep_groups) - set(opt_deps.keys())
+            if len(unknown_dep_groups) > 0:
+                raise RuntimeError(f"unknown dependency group(s): {unknown_dep_groups}")
+            queue.extend(dep_groups)
+            continue
+
+        if dep in opt_deps:
+            queue.extend([x.strip() for x in opt_deps[dep]])
+        else:
+            parsed.append(dep)
+
+    return parsed
+
+
+parser = argparse.ArgumentParser()
+
+parser.add_argument("profile", default="dev,test", nargs="?")
+parser.add_argument("--output", "-o", default="environment.yml")
+parser.add_argument("--channels", "-c", default=None)
+parser.add_argument("--name", "-n", default=None)
+parser.add_argument("--py-version", "-p", default=None)
+args = parser.parse_args()
+
+#
+with open("pyproject.toml", "rb") as f:
+    toml = load(f)
+deps = toml["project"]["dependencies"]
+opt_deps = toml["project"]["optional-dependencies"]
+project_name = toml["project"]["name"]
+# specific conda_install settings
+install_config = toml["tool"].get("make_env", {})
+deps_not_in_conda = install_config.get("deps_not_in_conda", [])
+channels = install_config.get("channels", ["conda-forge"])
+if args.channels is not None:
+    channels.extend(args.channels.split(","))
+
+# parse environment name
+name = args.name
+if name is None:
+    name = project_name
+print(f"Environment name: {name}")
+
+# parse dependencies groups and flavours
+# "min" equals no optional dependencies
+deps_to_install = deps.copy()
+if args.profile not in ["", "min"]:
+    extra_deps = _parse_profile(args.profile, opt_deps, project_name)
+    deps_to_install.extend(extra_deps)
+
+conda_deps = []
+pip_deps = []
+for dep in deps_to_install:
+    if dep in deps_not_in_conda:
+        pip_deps.append(dep)
+    else:
+        conda_deps.append(dep)
+if args.py_version is not None:
+    conda_deps.append(f"python=={args.py_version}")
+
+# add pip as a conda dependency if we have pip deps
+if len(pip_deps) > 0:
+    conda_deps.append("pip")
+
+# the list(set()) is to remove duplicates
+conda_deps_to_install_string = "\n- ".join(sorted(list(set(conda_deps))))
+channels_string = "\n- ".join(set(channels))
+
+# create environment.yml
+env_spec = f"""name: {name}
+
+channels:
+- {channels_string}
+
+dependencies:
+- {conda_deps_to_install_string}
+"""
+if len(pip_deps) > 0:
+    pip_deps_to_install_string = "\n  - ".join(sorted(list(set(pip_deps))))
+    env_spec += f"""- pip:
+  - {pip_deps_to_install_string}
+"""
+
+with open(args.output, "w") as out:
+    out.write(env_spec)

pyproject.toml

@@ -10,8 +10,9 @@ authors = [
 ]
 dependencies = [
     "dask",
-    "geopandas >=0.10",
-    "hydromt >=0.8",
+    "geopandas>=0.10",
+    "hydroengine",
+    "hydromt>=0.8",
     "netcdf4",
     "numpy",
     "pandas",
@@ -23,10 +24,9 @@ dependencies = [
     "toml",
     "xarray",
 ]
-requires-python = ">=3.8" # fix tests to support older versions
+requires-python = ">=3.9"
 readme = "README.rst"
 classifiers = [
-    # https://pypi.python.org/pypi?%3Aaction=list_classifiers
     "Development Status :: 4 - Beta",
     "Intended Audience :: Developers",
     "Intended Audience :: Science/Research",
@@ -37,14 +37,38 @@ classifiers = [
 dynamic = ['version', 'description']
 
 [project.optional-dependencies]
-test = ["pytest>=2.7.3", "pytest-cov", "black"]
+io = [
+    "requests",
+]
+extra = [
+    "gwwapi",
+    "pyet",
+]
+dev = [
+    "black",
+    "pip>=23.1.2",
+]
+test = [
+    "pytest>=2.7.3", 
+    "pytest-cov", 
+    "pytest-mock",
+]
 doc = [
     "nbsphinx",
     "sphinx",
     "sphinx_design",
     "pydata-sphinx-theme",
     "sphinx_autosummary_accessors",
 ]
+examples = [
+    "jupyterlab",      
+    "cartopy",        
+    "matplotlib-base",
+    "notebook",        
+]
+
+full = ["hydromt_wflow[io,extra,dev,test,doc,examples]"]
+slim = ["hydromt_wflow[io,extra,examples]"]
 
 [project.urls]
 Documentation = "http://deltares.github.io/hydromt_wflow/latest/"
@@ -54,9 +78,19 @@ Source = "https://github.com/Deltares/hydromt_wflow"
 wflow = "hydromt_wflow.wflow:WflowModel"
 wflow_sediment = "hydromt_wflow.wflow_sediment:WflowSedimentModel"
 
+[tool.make_env]
+channels = ["conda-forge"]
+deps_not_in_conda  = [
+    "gwwapi",
+    "hydroengine",
+    "sphinx_autosummary_accessors",
+    "sphinx_design",
+    "pyet",
+]
+
 [tool.black]
 line-length = 88
-target-version = ['py38']
+target-version = ['py39']
 
 [tool.flit.sdist]
 include = ["hydromt_wflow"]