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Set the blast db to refseq mitochondrion by default in the workflow
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@Delphine-L
Delphine-L committed Nov 1, 2023
1 parent 2856747 commit e1bdf60
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Showing 2 changed files with 49 additions and 89 deletions.
4 changes: 0 additions & 4 deletions ...ows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml
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class: File
location: https://www.dropbox.com/scl/fi/78taipsjo1e2sd6vzia8q/Scaffolded_assembly.fasta?rlkey=naq41o9fkt2ltlgc2dcjbbyz4&dl=1
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Mitochondria Database for BLAST:
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filetype: blastdbn
Database for Kraken2: viral2019-03
Include specific intervals - Optional: null
SAK input file - Optional: null
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134 changes: 49 additions & 85 deletions workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
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Expand All @@ -336,21 +300,21 @@
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