addition of workflow for assembly with hic phasing and its tests

workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml

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+version: 1.2
+workflows:
+- name: main
+  primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga
+  subclass: Galaxy
+  testParameterFiles:
+  - /Assembly-Hifi-HiC-phasing-VGP4-tests.yml

workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4-tests.yml

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+- doc: Test outline for Assembly-Hifi-HiC-phasing-VGP4
+  job:
+    HiC forward reads:
+      class: File
+      location: https://www.dropbox.com/scl/fi/i9qntoxnrw8bu5wtioc02/HiC-forward-reads.fastqsanger.gz?rlkey=r4fml1n7c7jq21yoq4rvrsh25&dl=1
+      filetype: fastqsanger.gz
+    HiC reverse reads:
+      class: File
+      location: https://www.dropbox.com/scl/fi/zq29m4094bf5lgo2cgudl/HiC-reverse-reads.fastqsanger.gz?rlkey=iry8y83zzp3ygjit2ejiyaiyl&dl=1
+      filetype: fastqsanger.gz
+    Genomescope Model Parameters:
+      class: File
+      path: test-data/Genomescope Model Parameters.tabular
+      filetype: tabular
+    Genomescope Summary:
+      class: File
+      location: https://zenodo.org/record/8371053/files/GenomeScope_Summary.txt?download=1
+      filetype: txt
+    Meryl Database:
+      class: File
+      location: https://zenodo.org/record/8371053/files/Meryl-db.meryldb?download=1
+      filetype: meryldb
+    Pacbio Reads Collection:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: yeast_reads_sub1.fastq.gz
+        location: https://zenodo.org/record/8371053/files/yeast_reads_sub1.fastq.gz?download=1
+    Bits for bloom filter: '32'
+    SAK input file (Optional): null
+    Name for Haplotype 1: Hap1
+    Name for Haplotype 2: Hap2
+  outputs:
+    Hifiasm HiC hap1:
+      assert: 
+        has_n_line:
+          n: 168
+    Estimated Genome size: 
+      asserts:
+        has_text: 
+          text: "2288021"
+    Busco Summary Hap1:
+      asserts:
+        has_text: 
+          text: "C:1.0%[S:1.0%,D:0.0%],F:0.4%,M:98.6%,n:3354"
+    Nx Plot:
+      asserts:
+        has_size:
+          value: 65000
+          delta: 10000
+      path: test-data/Nx Plot.png
+    usable hap1 gfa:
+      assert: 
+        has_n_line:
+          n: 173
+    Assembly statistics fir Hap1 and Hap2:
+      asserts:
+        has_text: 
+          text: "Metric	hap1	hap2"