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add histogram outputs to merqury
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@Delphine-L
Delphine-L committed Feb 15, 2024
1 parent 5d9e8ee commit 9da1287
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82 changes: 26 additions & 56 deletions workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/Assembly-Hifi-Trio-phasing-VGP5.ga
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],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.1.2",
"release": "0.1.3",
"name": "Assembly-Hifi-Trio-phasing-VGP5",
"steps": {
"0": {
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Expand All @@ -331,13 +313,7 @@
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"owner": "bgruening",
"tool_shed": "toolshed.g2.bx.psu.edu"
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"tool_state": "{\"advanced_options\": {\"advanced_selector\": \"blank\", \"__current_case__\": 0}, \"assembly_options\": {\"assembly_selector\": \"blank\", \"__current_case__\": 0}, \"bins_out\": false, \"filter_bits\": {\"__class__\": \"ConnectedValue\"}, \"hic_partition\": {\"hic_partition_selector\": \"blank\", \"__current_case__\": 0}, \"log_out\": true, \"mode\": {\"mode_selector\": \"trio\", \"__current_case__\": 1, \"reads\": {\"__class__\": \"ConnectedValue\"}, \"trioinput\": {\"trio_input_selector\": \"reads\", \"__current_case__\": 0, \"hap1_reads\": {\"__class__\": \"RuntimeValue\"}, \"hap2_reads\": {\"__class__\": \"RuntimeValue\"}}, \"max_kmers\": \"2\", \"min_kmers\": \"5\", \"yak_kmer_length\": \"31\", \"trio_dual\": false}, \"ont_integration\": {\"ont_integration_selector\": \"blank\", \"__current_case__\": 0}, \"purge_options\": {\"purge_selector\": \"blank\", \"__current_case__\": 0}, \"scaffolding_options\": {\"scaffold_selector\": \"blank\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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{
"label": "Busco Summary Image Hap2",
"output_name": "summary_image",
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"label": "Busco Summary Hap2",
"output_name": "busco_sum",
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"label": "Busco Summary Image Hap2",
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},
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"name": "stats_files",
"type": "input"
},
{
"name": "hist_files",
"type": "input"
},
{
"name": "log_file",
"type": "txt"
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"owner": "iuc",
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"tool_state": "{\"label\": \"output_merqury\", \"mode\": {\"options\": \"trio\", \"__current_case__\": 1, \"meryldb_F1\": {\"__class__\": \"ConnectedValue\"}, \"meryldb_PAT\": {\"__class__\": \"ConnectedValue\"}, \"meryldb_MAT\": {\"__class__\": \"ConnectedValue\"}, \"assembly_options\": {\"number_assemblies\": \"two\", \"__current_case__\": 1, \"assembly_01\": {\"__class__\": \"ConnectedValue\"}, \"assembly_02\": {\"__class__\": \"ConnectedValue\"}}}, \"output_add_headers\": true, \"output_selector\": [\"qv\", \"plots\", \"sizes\", \"stats\", \"bed\", \"wig\", \"log\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_state": "{\"label\": \"output_merqury\", \"mode\": {\"options\": \"trio\", \"__current_case__\": 1, \"meryldb_F1\": {\"__class__\": \"RuntimeValue\"}, \"meryldb_PAT\": {\"__class__\": \"RuntimeValue\"}, \"meryldb_MAT\": {\"__class__\": \"RuntimeValue\"}, \"assembly_options\": {\"number_assemblies\": \"two\", \"__current_case__\": 1, \"assembly_01\": {\"__class__\": \"RuntimeValue\"}, \"assembly_02\": {\"__class__\": \"RuntimeValue\"}}}, \"output_add_headers\": true, \"output_selector\": [\"qv\", \"plots\", \"sizes\", \"stats\", \"bed\", \"wig\", \"log\", \"hist\"], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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"output_name": "2:output",
"uuid": "2530c4c5-5f68-48a4-9da1-c86696f84a1f"
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"label": "Size Plot",
"output_name": "Size Plot",
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},
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"VGP",
"Reviewed"
],
"uuid": "0db51f45-52e7-4f61-a619-11af3d4f5219",
"version": 2
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"uuid": "cb7f8a94-71f3-48c3-9f7b-3cfb2ed86cb2",
"version": 1
}
4 changes: 4 additions & 0 deletions workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/CHANGELOG.md
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# Changelog


## [0.1.3] 2024-02-15

- Add histogram outputs to merqury


## [0.1.2] 2023-11-14

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