Addition of the workflow 6 for purgedups

workflows/VGP-assembly-v2/Purgedups-VGP6/.dockstore.yml

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+version: 1.2
+workflows:
+- name: main
+  primaryDescriptorPath: /Purgedups-WF6.ga
+  subclass: Galaxy
+  testParameterFiles:
+  - /Purgedups-WF6-tests.yml

workflows/VGP-assembly-v2/Purgedups-VGP6/Purgedups-WF6-tests.yml

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+- doc: Test outline for Purgedups-WF6
+  job:
+    Hifiasm Primary assembly:
+      class: File
+      location: https://www.dropbox.com/scl/fi/9vszjjc2s2wjyynwzdday/Hifiasm-Primary-assembly.fasta?rlkey=iikx1zf3makx8tea2rvfdz5bv&dl=1
+      filetype: fasta
+    Hifiasm Alternate assembly:
+      class: File
+      location: https://www.dropbox.com/scl/fi/rlikmkfwjdl2fk584xcoy/Hifiasm-Alternate-assembly.fasta?rlkey=8629bdqyt10te3dvlnho0vgdw&dl=1
+      filetype: fasta
+    Meryl Database:
+      class: File
+      location: https://www.dropbox.com/scl/fi/9nkb5rgo15bq7qug81sve/Meryl-Database.meryldb?rlkey=bhcjv65tqg5ebaavvybscztl1&dl=1
+      filetype: meryldb
+    Genomescope model parameters:
+      class: File
+      location: https://www.dropbox.com/scl/fi/q8p0donxzvcv7b1wrn7xp/Genomescope-model-parameters.tabular?rlkey=2wjo0ymxiay51danj715dtsbp&dl=1
+      filetype: tabular
+    Estimated genome size - Parameter File:
+      class: File
+      location: https://www.dropbox.com/scl/fi/es8yn0vl2gp3crilfbj1y/Estimated-genome-size-Parameter-File.expression.json?rlkey=p83ky9xa72fqrr4dm5cpgza5f&dl=1
+      filetype: expression.json
+    Pacbio Reads Collection - Trimmed:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: yeast_reads_sub1.fastq.gz
+        location: https://www.dropbox.com/scl/fi/lurqcq79www0e1g4e3qo3/Pacbio-Reads-Collection-Trimmed_yeast_reads_sub1.fastq.gz.fastq.gz?rlkey=nfbvfr0jcpknj66mp2fb0xsv2&dl=1
+    Busco Lineage: vertebrata_odb10
+    SAK input file (Optional): null
+    Name of primary assembly: Primary
+    Name of alternate assembly: Alternate
+  outputs:
+    Cutoffs for primary assembly:
+      asserts:
+        has_text:
+          text: "1	15	15	16	16	48"
+    Purged Primary Assembly:
+      asserts:
+        has_n_lines:
+          n: 156
+    Purged Primary Assembly (gfa):
+      asserts:
+        has_n_lines:
+          n: 235
+    'Busco on Purged Primary assembly: short summary':
+      asserts:
+        has_text:
+          text: "C:1.1%[S:1.1%,D:0.0%],F:0.5%,M:98.4%,n:3354"
+    Cutoffs for alternate assembly:
+      asserts:
+        has_text:
+          text: "1	15	15	16	16	48"
+    Purged Alternate assembly:
+      asserts:
+        has_n_lines:
+          n: 144
+    Purged Alternate assembly (gfa):
+      asserts:
+        has_n_lines:
+          n: 217
+    Assembly stats on Primary and alternate assemblies:
+      asserts:
+        has_text:
+          text: "# contigs	78	72"
+    Nx Plot:
+      asserts:
+        has_size: 
+          value : 61000
+          delta: 5000
+    'Merqury on Phased assemblies: stats':
+      element_tests:
+        output_merqury.completeness:
+         asserts:
+          has_text:
+            text: "# contigs	78	72"