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Update recon-surfreg.sh
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m-reuter authored Sep 16, 2024
1 parent 77231fb commit 4884378
Showing 1 changed file with 5 additions and 4 deletions.
9 changes: 5 additions & 4 deletions recon_surf/recon-surfreg.sh
Original file line number Diff line number Diff line change
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# limitations under the License.

VERSION='$Id$'
FS_VERSION_SUPPORT="7.3.2"
FS_VERSION_SUPPORT="7.4.1"

# Regular flags default
subject=""; # Subject name
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{
cat << EOF
Usage: recon-surfreg.sh --sid <sid> --sd <sdir> --seg <seg> [OPTIONS]
Usage: recon-surfreg.sh --sid <sid> --sd <sdir> [OPTIONS]
recon-surfreg.sh takes a segmentation and T1 full head image and creates surfaces,
thickness etc as a FS subject dir.
recon-surfreg.sh creates the ?h.sphere and ?h.sphere.reg from an existing
subject directory, if this step was skipped in recon-surf.sh with --no_surfreg
ATTENTION: currently no highres support yet !!!
FLAGS:
--sid <subjectID> Subject ID to create directory inside \$SUBJECTS_DIR
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