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Deep-MI · Oct 1, 2024 · 2e4ce09 · 2e4ce09
1 parent d6896e1
commit 2e4ce09
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/recon_surf/recon-surf.sh b/recon_surf/recon-surf.sh
@@ -1185,6 +1185,8 @@ if [ "$base" != "1" ] ; then
  else
 
  if [ "$long" == "1" ] ; then
+ # in long we do not have orig_nofix for surface hole computation as surfaces
+ # are inherited from base/template
  cmd=($python "$FASTSURFER_HOME/FastSurferCNN/segstats.py" --sid "$subject"
  --segfile "$mdir/aseg.mgz" --segstatsfile "$statsdir/aseg.stats"
  --pvfile "$mdir/norm.mgz" --normfile "$mdir/norm.mgz" --threads "$threads"