5.11.0

Breaking Changes

• Imported files will be symlinked by default, unless the user sets --noLinkImports or the workflow imports with symlink=False. (#3949)

WDL

• Toil will now stop if it encounters an error polling a possible import URL for a WDL workflow input file. (#4479)
• WDL workflows will be protected against imported files with no basenames. (#4477)

Misc

• Toil batch system ID numbers for issued jobs now start at 1. (#4482)
• Attempts to import files from URLs when the implementing job store is missing an extra are now better reported. (#4479)
• Include tests in the source distribution that gets published to PyPI (#4499)

Bug Fixes

• Toil should no longer crash when a delete wins a race against a load in FileJobStore (#4484)
• Prevent local root jobs (such as WDLRootJob) from being run twice. (#4482)
• Slurm and other grid batch system jobs will now have more informative names (#4472)
• WDL workflows can no longer import "" as a File. (#4477)

Thank you to our contributors: @stxue1, @DailyDreaming, @mr-c, @adamnovak