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3.17.0

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@DailyDreaming DailyDreaming released this 04 Aug 01:37
· 1966 commits to master since this release
585383e
  • Add CWL destBucket runtime option to deposit CWL outputs into cloud buckets
  • Update boto3 and boto
  • Better Error messages when docker images are unavailable
  • Broader checking for docker image existence prior to launching blindly
  • Incremental Python2/3 compatibility improvements
  • Enable support for specifying zone in all environment variables
  • Expose --force-docker-pull and --no-match-user options from cwltool
  • Add mem free option to UGE
  • Convert most log messages to debug level
  • Update cwltool from 1.0.20180518123035 to 1.0.20180521150620
  • Incremental WDL Support Improvements (docker permissions, parsing, and improved logging)
  • Documentation Housekeeping and Code Cleanup

Bug Fixes

  • Stop FileJobStore DEBUG messages from sneaking out once for every job
  • WDL Parsing Error
  • Fix docker daemon detection depending on terminal size
  • Checking virtualenv
  • Properly filtering AWS security groups
  • Fix a crash if job is larger than all available node types
  • Avoid overwriting NVMe root volumes on current-gen AWS instances
  • Don't call addNodes if the delta was met by unignoring nodes
  • Fix AWSJobStore updates not working if values are shrunk
  • Prevent worker from checking for nonexistant file

Thank you to our contributors: @mr-c (big thanks for all of the CWL support!), @jsmedmar, @bencvdb, @tom-dyar, @joelarmstrong, @mwiens91, @jessebrennan, and @adamnovak!