Release 3.12.0
ejacox
released this
08 Nov 16:45
·
3105 commits
to master
since this release
- Forkless mode for debugging
- Enabled Travis builds with a subset of tests (less than 15 minutes).
- DockerCall function changed to use docker API.
- Updated to Azure version 2.0.
- Added tempDir convenience function to job and made job.log an alias for fileStore.LogToMaster.
- Enhanced toil-cwl-runner to support SoftwareRequirements & BioContainers.
- Increased default retry count to 1.
- Deprecated cgcloud.
- Updated EC2 instance types.
- Upgraded pip to 9.0.1 and setup tools to 36.5.0 in appliance build.
Bug fixes
- Parasol parses jobStore path correctly.
- Parasol doesn't attempt to remove jobs that it didn't launch.
- Fixed problem with dynamic batch systems not always being created.
- Fix workflow effort being wasted if a single export fails.
- Added a default value for maxNodes.
- Fixed py.test collection errors when running locally.
Thank you to our external contributors: @jmchilton, @jorvis, @evan-wehi, @mr-c, @brainstorm