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Release 3.12.0

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@ejacox ejacox released this 08 Nov 16:45
· 3105 commits to master since this release
  • Forkless mode for debugging
  • Enabled Travis builds with a subset of tests (less than 15 minutes).
  • DockerCall function changed to use docker API.
  • Updated to Azure version 2.0.
  • Added tempDir convenience function to job and made job.log an alias for fileStore.LogToMaster.
  • Enhanced toil-cwl-runner to support SoftwareRequirements & BioContainers.
  • Increased default retry count to 1.
  • Deprecated cgcloud.
  • Updated EC2 instance types.
  • Upgraded pip to 9.0.1 and setup tools to 36.5.0 in appliance build.

Bug fixes

  • Parasol parses jobStore path correctly.
  • Parasol doesn't attempt to remove jobs that it didn't launch.
  • Fixed problem with dynamic batch systems not always being created.
  • Fix workflow effort being wasted if a single export fails.
  • Added a default value for maxNodes.
  • Fixed py.test collection errors when running locally.

Thank you to our external contributors: @jmchilton, @jorvis, @evan-wehi, @mr-c, @brainstorm