FE-349 data clean up for hca ingest manifest.py #84

	# generates a requirements.txt file from poetry.lock and commits it to the branch that triggered the workflow,
	# for SourceClear to use to scan for vulnerabilities.
	name: Generate requirements file

	on:
	pull_request:
	branches:
	- main

	jobs:
	generate-requirements-file:
	runs-on: ubuntu-latest
	steps:
	- name: Check out repository
	uses: actions/checkout@v3
	# Needed by sonar to get the git history for the branch the PR will be merged into.
	with:
	fetch-depth: 0
	- name: Set up python
	id: setup-python
	uses: actions/setup-python@v4
	with:
	python-version: 3.9.16
	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	version: 1.1.9
	virtualenvs-create: true
	virtualenvs-in-project: true
	installer-parallel: true

	- name: Generate requirements.txt
	run: poetry export -f requirements.txt --without-hashes --no-interaction --output requirements.txt
	working-directory: ${{ github.workspace }}/orchestration

	- name: Commit requirements.txt
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "dsp-fieldeng-bot"
	git add orchestration/requirements.txt
	git commit -m "Update requirements.txt" --allow-empty

	- name: Get branch name
	id: branch-name
	uses: tj-actions/branch-names@v7

	- name: Push changes
	uses: ad-m/github-push-action@master
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	branch: ${{ steps.branch-name.outputs.current_branch }} # Pushes to the branch the action is run on
	force: true

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