Merge pull request #294 from ldecicco-USGS/master

Getting proper citation up to GRAN
DOI-USGS · Sep 5, 2018 · b3d0f84 · b3d0f84
2 parents 7eb6e04 + 4f1075b
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: toxEval
 Type: Package
 Title: ToxCast Evaluations
-Version: 1.0.0
-Date: 2018-07-31
+Version: 1.0.1
+Date: 2018-09-05
 Authors@R: c(person("Laura", "DeCicco", 
                      role = c("aut","cre"),
                      email = "[email protected]"),

diff --git a/README.Rmd b/README.Rmd
@@ -76,8 +76,9 @@ plot_stacks <- plot_tox_stacks(chemicalSummary,
 plot_stacks
 ######################################
 plot_heat <- plot_tox_heatmap(chemicalSummary, 
-                               tox_list$chem_site, 
-                               category = "Chemical")
+                              tox_list$chem_site, 
+                              category = "Chemical Class",
+                              font_size = 7)
 plot_heat
 ```
 

diff --git a/README.md b/README.md
@@ -69,8 +69,9 @@ plot_stacks
 ``` r
 ######################################
 plot_heat <- plot_tox_heatmap(chemicalSummary, 
-                               tox_list$chem_site, 
-                               category = "Chemical")
+                              tox_list$chem_site, 
+                              category = "Chemical Class",
+                              font_size = 7)
 plot_heat
 ```
 

diff --git a/docs/CONDUCT.html b/docs/CONDUCT.html
diff --git a/docs/DISCLAIMER.html b/docs/DISCLAIMER.html
diff --git a/docs/articles/Introduction.html b/docs/articles/Introduction.html
diff --git a/docs/articles/PrepareData.html b/docs/articles/PrepareData.html
diff --git a/docs/articles/basicWorkflow.html b/docs/articles/basicWorkflow.html
diff --git a/docs/articles/basicWorkflow_files/figure-html/boxDetails-1.png b/docs/articles/basicWorkflow_files/figure-html/boxDetails-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/boxplots1-1.png b/docs/articles/basicWorkflow_files/figure-html/boxplots1-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/endpoints-1.png b/docs/articles/basicWorkflow_files/figure-html/endpoints-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/heat-1.png b/docs/articles/basicWorkflow_files/figure-html/heat-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/maumeePlot-1.png b/docs/articles/basicWorkflow_files/figure-html/maumeePlot-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/plot_box_thres-1.png b/docs/articles/basicWorkflow_files/figure-html/plot_box_thres-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/siteStacks-1.png b/docs/articles/basicWorkflow_files/figure-html/siteStacks-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/stackplots1-1.png b/docs/articles/basicWorkflow_files/figure-html/stackplots1-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/basicWorkflow_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/basicWorkflow_files/figure-html/unnamed-chunk-5-2.png b/docs/articles/basicWorkflow_files/figure-html/unnamed-chunk-5-2.png
diff --git a/...ow_files/leaflet-binding-2.0.1/leaflet.js → ...ow_files/leaflet-binding-2.0.2/leaflet.js b/...ow_files/leaflet-binding-2.0.1/leaflet.js → ...ow_files/leaflet-binding-2.0.2/leaflet.js
@@ -1287,10 +1287,18 @@ function mouseHandler(mapId, layerId, group, eventName, extraInfo) {
   return function (e) {
     if (!_htmlwidgets2.default.shinyMode) return;
 
+    var latLng = e.target.getLatLng ? e.target.getLatLng() : e.latlng;
+    if (latLng) {
+      // retrieve only lat, lon values to remove prototype
+      //   and extra parameters added by 3rd party modules
+      // these objects are for json serialization, not javascript
+      var latLngVal = _leaflet2.default.latLng(latLng); // make sure it has consistent shape
+      latLng = { lat: latLngVal.lat, lng: latLngVal.lng };
+    }
     var eventInfo = _jquery2.default.extend({
       id: layerId,
       ".nonce": Math.random() // force reactivity
-    }, group !== null ? { group: group } : null, e.target.getLatLng ? e.target.getLatLng() : e.latlng, extraInfo);
+    }, group !== null ? { group: group } : null, latLng, extraInfo);
 
     _shiny2.default.onInputChange(mapId + "_" + eventName, eventInfo);
   };

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diff --git a/...et-binding-2.0.1/lib/jquery/jquery.min.js → ...et-binding-2.0.2/lib/jquery/jquery.min.js b/...et-binding-2.0.1/lib/jquery/jquery.min.js → ...et-binding-2.0.2/lib/jquery/jquery.min.js
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diff --git a/...lib/leaflet-measure/images/[email protected] → ...lib/leaflet-measure/images/[email protected] b/...lib/leaflet-measure/images/[email protected] → ...lib/leaflet-measure/images/[email protected]
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diff --git a/.../lib/leaflet-measure/images/[email protected] → .../lib/leaflet-measure/images/[email protected] b/.../lib/leaflet-measure/images/[email protected] → .../lib/leaflet-measure/images/[email protected]
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diff --git a/.../lib/leaflet-measure/images/[email protected] → .../lib/leaflet-measure/images/[email protected] b/.../lib/leaflet-measure/images/[email protected] → .../lib/leaflet-measure/images/[email protected]
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diff --git a/...inding-2.0.1/lib/leaflet-omnivore/LICENSE → ...inding-2.0.2/lib/leaflet-omnivore/LICENSE b/...inding-2.0.1/lib/leaflet-omnivore/LICENSE → ...inding-2.0.2/lib/leaflet-omnivore/LICENSE
diff --git a/...nding-2.0.1/lib/leaflet-omnivore/index.js → ...nding-2.0.2/lib/leaflet-omnivore/index.js b/...nding-2.0.1/lib/leaflet-omnivore/index.js → ...nding-2.0.2/lib/leaflet-omnivore/index.js
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diff --git a/.../lib/leaflet-providers/rstudio_install.md → .../lib/leaflet-providers/rstudio_install.md b/.../lib/leaflet-providers/rstudio_install.md → .../lib/leaflet-providers/rstudio_install.md
diff --git a/...ng-2.0.1/lib/leaflet/images/layers-2x.png → ...ng-2.0.2/lib/leaflet/images/layers-2x.png b/...ng-2.0.1/lib/leaflet/images/layers-2x.png → ...ng-2.0.2/lib/leaflet/images/layers-2x.png
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diff --git a/...nding-2.0.1/lib/leafletfix/leafletfix.css → ...nding-2.0.2/lib/leafletfix/leafletfix.css b/...nding-2.0.1/lib/leafletfix/leafletfix.css → ...nding-2.0.2/lib/leafletfix/leafletfix.css
diff --git a/...-2.0.1/lib/rstudio_leaflet/images/1px.png → ...-2.0.2/lib/rstudio_leaflet/images/1px.png b/...-2.0.1/lib/rstudio_leaflet/images/1px.png → ...-2.0.2/lib/rstudio_leaflet/images/1px.png
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diff --git a/...-2.0.1/plugins/Leaflet.EasyButton/LICENSE → ...-2.0.2/plugins/Leaflet.EasyButton/LICENSE b/...-2.0.1/plugins/Leaflet.EasyButton/LICENSE → ...-2.0.2/plugins/Leaflet.EasyButton/LICENSE
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diff --git a/...esome-markers/images/[email protected] → ...esome-markers/images/[email protected] b/...esome-markers/images/[email protected] → ...esome-markers/images/[email protected]
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diff --git a/...some-markers/images/[email protected] → ...some-markers/images/[email protected] b/...some-markers/images/[email protected] → ...some-markers/images/[email protected]
diff --git a/...t.awesome-markers/images/markers-soft.png → ...t.awesome-markers/images/markers-soft.png b/...t.awesome-markers/images/markers-soft.png → ...t.awesome-markers/images/markers-soft.png
diff --git a/...wesome-markers/images/[email protected] → ...wesome-markers/images/[email protected] b/...wesome-markers/images/[email protected] → ...wesome-markers/images/[email protected]
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