Improve scadnano helices (ticks, min/max offsets) #300
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| # SPDX-FileCopyrightText: 2021-2022 Constantine Evans <[email protected]> | |
| # | |
| # SPDX-License-Identifier: MIT | |
| name: Python tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - v2 | |
| paths-ignore: | |
| - CHANGELOG.md | |
| - README.md | |
| - AUTHORS.md | |
| pull_request: | |
| branches: | |
| - main | |
| - v2 | |
| paths-ignore: | |
| - CHANGELOG.md | |
| - README.md | |
| - AUTHORS.md | |
| jobs: | |
| black: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - uses: actions/checkout@v3 | |
| - uses: psf/black@stable | |
| with: | |
| options: "--check --verbose --diff" | |
| src: "./src" | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools_scm[toml] wheel setuptools | |
| python -m pip install --upgrade attrs types-attrs types-tabulate types-PyYAML types-toml | |
| python -m pip install --upgrade "git+https://github.com/python/mypy.git" | |
| python -m pip install --upgrade .[all] | |
| mkdir -p .mypy_cache | |
| - name: Mypy | |
| run: | | |
| mypy --cache-dir .mypy_cache --install-types --non-interactive --show-traceback ./src/alhambra | |
| tests: | |
| #needs: "mypy" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools_scm[toml] wheel setuptools | |
| python -m pip install --upgrade pytest | |
| python -m pip install --upgrade .[all] | |
| python -m pip install --upgrade .[testing] | |
| - name: Test with tox/pytest | |
| run: | | |
| python -m pytest --cov alhambra --cov-report=xml | |
| - name: "Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: false |