Merge pull request #1176 from ssimpson-ens/afg3152cchannel-docs #4
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| name: PyMeasure CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| pull_request: | |
| jobs: | |
| docs_lint: | |
| name: Docs and Linting | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install pymeasure requirements | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: .github/pymeasure.yml | |
| cache-environment-key: pylatest-ubuntu-latest-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| cache-downloads: false | |
| - name: Python and Mamba version | |
| run: | | |
| python --version | |
| micromamba info | |
| - name: Set up flake8 annotations | |
| uses: rbialon/flake8-annotations@v1 | |
| - name: Lint with flake8 | |
| run: | | |
| # Be sure to check for Python syntax errors or undefined names | |
| flake8 . --count --extend-select=E9,F63,F7,F82 --show-source --statistics | |
| - uses: ammaraskar/sphinx-problem-matcher@master | |
| - name: Generate docs | |
| if: always() # run even if the previous step failed | |
| working-directory: ./docs | |
| run: | | |
| echo "::add-matcher::.github/sphinx.json" | |
| make html SPHINXOPTS="-W --keep-going" | |
| - name: Run doctests | |
| if: always() # run even if the previous step failed | |
| working-directory: ./docs | |
| run: | | |
| echo "::add-matcher::.github/sphinx.json" | |
| make doctest SPHINXOPTS="-W --keep-going" | |
| test_coverage: | |
| name: Code Coverage on codecov | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install pymeasure requirements | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: .github/pymeasure.yml | |
| create-args: python=${{ matrix.python-version }} | |
| cache-environment-key: py${{ matrix.python-version }}-${{ matrix.os }}-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| cache-downloads: false | |
| - name: Python version | |
| run: python --version | |
| - name: Install Pymeasure | |
| run: pip install -e .[tests] # editable for covtest | |
| - name: Pymeasure version | |
| run: python -c "import pymeasure;print(pymeasure.__version__)" | |
| - name: Test for Coverage | |
| # xvfb for graphical interface | |
| run: | | |
| echo "::add-matcher::.github/pytest.json" | |
| xvfb-run -a pytest --cov=pymeasure --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| files: ./coverage.xml,!./cache | |
| flags: unittests | |
| name: codecov-umbrella | |
| verbose: true | |
| test: | |
| name: Python ${{ matrix.python-version }}, ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install pymeasure requirements | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| # ternary operator: if python-version == 3.12 use pymeasure_python312.yml else use pymeasure.yml | |
| environment-file: ${{ matrix.python-version == '3.12' && '.github/pymeasure_python312.yml' || '.github/pymeasure.yml'}} | |
| create-args: python=${{ matrix.python-version }} | |
| cache-environment-key: py${{ matrix.python-version }}-${{ matrix.os }}-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| cache-downloads: false | |
| - name: Python version | |
| run: python --version | |
| - name: Install Pymeasure | |
| # If the pytest problem matcher stops working because of bad paths, do an editable install | |
| run: pip install .[tests] | |
| - name: Pymeasure version | |
| run: python -c "import pymeasure;print(pymeasure.__version__)" | |
| - name: Run pytest with xvfb | |
| if: runner.os == 'Linux' | |
| run: | | |
| echo "::add-matcher::.github/pytest.json" | |
| xvfb-run -a pytest | |
| - name: Run pytest | |
| if: runner.os != 'Linux' | |
| run: | | |
| echo "::add-matcher::.github/pytest.json" | |
| pytest | |
| test_numpy2: | |
| name: Python 3.11, ubuntu-latest, numpy>=2 | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install pymeasure requirements | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: .github/pymeasure_numpy2.yml | |
| create-args: python=3.11 | |
| cache-environment-key: py3.11-ubuntu-latest-mamba-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| cache-downloads: false | |
| - name: Python version | |
| run: python --version | |
| - name: Install Pymeasure | |
| # If the pytest problem matcher stops working because of bad paths, do an editable install | |
| run: pip install .[tests] | |
| - name: Pymeasure version | |
| run: python -c "import pymeasure;print(pymeasure.__version__)" | |
| - name: Run pytest with xvfb | |
| run: | | |
| echo "::add-matcher::.github/pytest.json" | |
| xvfb-run -a pytest |