Merge pull request #227 from CovertLab/workflow-fixes

CovertLab · May 25, 2024 · e7c2ad3 · e7c2ad3
2 parents 09c0ee5 + b6a98ef
commit e7c2ad3
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Showing 141 changed files with 8,592 additions and 7,103 deletions.
diff --git a/.gitignore b/.gitignore
@@ -59,5 +59,4 @@ ecoli/composites/ecoli_configs/test_configs/test_export.json
 # Nextflow files #
 ##################
 .nextflow*
-work
-scripts/nextflow/main.nf
+nextflow_temp
diff --git a/data/antibiotics_wcecoli_t0.json b/data/antibiotics_wcecoli_t0.json
diff --git a/data/migration/bulk_partitioned_t0.json b/data/migration/bulk_partitioned_t0.json
diff --git a/data/migration/bulk_partitioned_t1870.json b/data/migration/bulk_partitioned_t1870.json
diff --git a/data/migration/bulk_requested_t0.json b/data/migration/bulk_requested_t0.json
diff --git a/data/migration/bulk_requested_t1870.json b/data/migration/bulk_requested_t1870.json
diff --git a/data/migration/mass_data.json b/data/migration/mass_data.json
diff --git a/data/migration/process_updates_t0.json b/data/migration/process_updates_t0.json
diff --git a/data/migration/process_updates_t1870.json b/data/migration/process_updates_t1870.json
diff --git a/data/migration/wcecoli_listeners_t0.json b/data/migration/wcecoli_listeners_t0.json
diff --git a/data/migration/wcecoli_listeners_t1870.json b/data/migration/wcecoli_listeners_t1870.json
diff --git a/data/migration/wcecoli_t0.json b/data/migration/wcecoli_t0.json
diff --git a/data/migration/wcecoli_t0_before_layer_0.json b/data/migration/wcecoli_t0_before_layer_0.json
diff --git a/data/migration/wcecoli_t0_before_layer_1.json b/data/migration/wcecoli_t0_before_layer_1.json
diff --git a/data/migration/wcecoli_t0_before_layer_2.json b/data/migration/wcecoli_t0_before_layer_2.json
diff --git a/data/migration/wcecoli_t0_before_layer_3.json b/data/migration/wcecoli_t0_before_layer_3.json
diff --git a/data/migration/wcecoli_t0_before_layer_4.json b/data/migration/wcecoli_t0_before_layer_4.json
diff --git a/data/migration/wcecoli_t0_before_layer_5.json b/data/migration/wcecoli_t0_before_layer_5.json
diff --git a/data/migration/wcecoli_t0_before_layer_6.json b/data/migration/wcecoli_t0_before_layer_6.json
diff --git a/data/migration/wcecoli_t0_before_layer_7.json b/data/migration/wcecoli_t0_before_layer_7.json
diff --git a/data/migration/wcecoli_t0_before_post.json b/data/migration/wcecoli_t0_before_post.json
diff --git a/data/migration/wcecoli_t1870.json b/data/migration/wcecoli_t1870.json