uv 0.5.21 no longer requires explicit CC #1302
Workflow file for this run
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# Modified from GitHub Actions template | |
name: QA | |
on: | |
push: | |
branches: [master] | |
pull_request: | |
branches: [master] | |
jobs: | |
Pytest: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install uv | |
uses: astral-sh/setup-uv@v4 | |
with: | |
enable-cache: true | |
version: "0.5.7" | |
- name: Install model | |
run: USE_CYTHON=1 uv sync --frozen --extra dev | |
- name: Test with pytest | |
run: | | |
uv run pytest --cov-report xml:cov.xml --cov=ecoli --cov=reconstruction --cov=wholecell --cov=runscripts --durations=0 | |
- name: Code Coverage Report | |
uses: irongut/[email protected] | |
with: | |
filename: cov.xml | |
format: markdown | |
indicators: true | |
output: both | |
- name: Add Coverage PR Comment | |
uses: marocchino/sticky-pull-request-comment@v2 | |
if: github.event_name == 'pull_request' | |
with: | |
recreate: true | |
path: code-coverage-results.md | |
Mypy: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install uv | |
uses: astral-sh/setup-uv@v4 | |
with: | |
enable-cache: true | |
version: "0.5.7" | |
- name: Install model | |
run: USE_CYTHON=1 uv sync --frozen --extra dev | |
- name: Mypy | |
run: | | |
uv run mypy | |
Lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Install uv | |
uses: astral-sh/setup-uv@v4 | |
with: | |
enable-cache: true | |
version: "0.5.7" | |
- name: Install model | |
run: USE_CYTHON=1 uv sync --frozen --extra dev | |
- name: Ruff | |
run: | | |
uv run ruff check doc ecoli migration wholecell runscripts validation reconstruction |