refactor: datacollector #4184
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Continuous Integration | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| testing: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash | |
| container: complat/chemotion_eln_runner:main | |
| services: | |
| postgres: | |
| image: postgres:16 # https://hub.docker.com/_/postgres | |
| env: | |
| POSTGRES_PASSWORD: postgres # env variable required by postgres Docker container | |
| POSTGRES_USER: chemotion # optional env variable used in conjunction with POSTGRES_PASSWORD to set a user and their password | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v3 | |
| - name: create user for datacollectors testing | |
| run: | | |
| useradd testuser -ms /bin/bash | |
| mkdir /home/testuser/.ssh | |
| chown testuser:testuser /home/testuser/.ssh | |
| chmod 700 /home/testuser/.ssh | |
| mkdir -p $HOME/.ssh | |
| chmod 700 $HOME/.ssh | |
| service ssh restart | |
| ssh-keygen -t ed25519 -f $HOME/.ssh/id_test -N "" | |
| cat "${HOME}/.ssh/id_test.pub" | tee -a /home/testuser/.ssh/authorized_keys | |
| ssh-keyscan -H 127.0.0.1 >> $HOME/.ssh/known_hosts | |
| - name: configure repository | |
| run: | | |
| mv public/welcome-message-sample.md public/welcome-message.md | |
| cp .env.test.example .env.test | |
| cd config | |
| cp database.yml.gitlab database.yml | |
| cp -f datacollectors.yml.example datacollectors.yml | |
| cp -f profile_default.yml.example profile_default.yml | |
| cp -f shrine.yml.example shrine.yml | |
| cp -f storage.yml.example storage.yml | |
| cp -f radar.yml.example radar.yml | |
| touch klasses.json | |
| bundle config set without '' | |
| - name: configure postgres | |
| env: | |
| PG_ROLE: chemotion_test | |
| PG_ROLE_PASSWORD: 123456 | |
| PG_DATABASE: chemotion_test | |
| PGPASSWORD: postgres # env variable required by psql client | |
| run: | # host is service container name | |
| psql -h postgres -U chemotion -c "CREATE ROLE $PG_ROLE LOGIN CREATEDB NOSUPERUSER PASSWORD '$PG_ROLE_PASSWORD';" | |
| psql -h postgres -U chemotion -c "CREATE DATABASE $PG_DATABASE OWNER $PG_ROLE;" | |
| psql -d postgresql://$PG_ROLE:$PG_ROLE_PASSWORD@postgres/$PG_DATABASE -c 'CREATE EXTENSION IF NOT EXISTS "pg_trgm"; CREATE EXTENSION IF NOT EXISTS "hstore"; CREATE EXTENSION IF NOT EXISTS "uuid-ossp";' | |
| - name: bundle install | |
| run: bundle install | |
| - name: prepare postgres | |
| run: | | |
| RAILS_ENV=test bundle exec rake db:migrate | |
| RAILS_ENV=test bundle exec rake db:test:prepare | |
| - name: rspec unit | |
| run: | | |
| service ssh restart | |
| eval `ssh-agent` | |
| DATACOLLECTOR_FACTORY_SFTP_USER=testuser DATACOLLECTOR_FACTORY_SFTP_KEY=id_test RAILS_ENV=test bundle exec rspec --exclude-pattern spec/{features}/**/*_spec.rb spec/lib/datacollector | |
| - name: coverage rspec unit | |
| if: github.event.pull_request && (github.event.pull_request.head.repo.full_name == github.event.pull_request.base.repo.full_name) && (github.triggering_actor != 'dependabot[bot]') # don't run on PRs from forks because of missing write permission: https://github.com/orgs/community/discussions/26829 | |
| uses: zgosalvez/github-actions-report-lcov@v1 | |
| with: | |
| coverage-files: coverage/lcov/${{ github.event.repository.name }}.lcov | |
| minimum-coverage: 57 | |
| artifact-name: code-coverage-report | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |