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CogStack

CogStack and related projects

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  1. CogStack-NiFi CogStack-NiFi Public

    Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

    Python 37 19

  2. MedCAT MedCAT Public

    Medical Concept Annotation Tool

    Python 447 103

  3. MedCATtrainer MedCATtrainer Public

    A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

    Python 71 34

  4. Foresight Foresight Public

    Deep Generative Modelling of Patient Timelines using Electronic Health Records

    Jupyter Notebook 50 6

  5. OpenGPT OpenGPT Public

    A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

    Jupyter Notebook 337 39

Repositories

Showing 10 of 30 repositories
  • MedCAT Public

    Medical Concept Annotation Tool

    CogStack/MedCAT’s past year of commit activity
    Python 447 103 3 1 Updated Nov 1, 2024
  • MedCATtrainer Public

    A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

    CogStack/MedCATtrainer’s past year of commit activity
    Python 71 34 16 6 Updated Oct 31, 2024
  • CogStack-NiFi Public

    Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

    CogStack/CogStack-NiFi’s past year of commit activity
    Python 37 19 0 1 Updated Oct 9, 2024
  • working_with_cogstack Public

    Basic setup and easy to follow templates to interact and search CogStack for data analysts

    CogStack/working_with_cogstack’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 6 0 0 Updated Oct 8, 2024
  • MedCATservice Public

    Running MedCAT as a RESTful web service

    CogStack/MedCATservice’s past year of commit activity
    Python 17 14 0 0 Updated Oct 7, 2024
  • MedCATtutorials Public

    General tutorials for the setup and use of MedCAT.

    CogStack/MedCATtutorials’s past year of commit activity
    HTML 31 MIT 15 2 1 Updated Sep 30, 2024
  • CogStack-ModelServe Public

    A model serving and governance system for CogStack NLP solutions

    CogStack/CogStack-ModelServe’s past year of commit activity
    Python 0 1 0 0 Updated Sep 27, 2024
  • MedCATdemowebapp Public

    Demo web app for MedCAT

    CogStack/MedCATdemowebapp’s past year of commit activity
    Python 0 0 0 0 Updated May 22, 2024
  • AnonCATDemo Public Forked from antsh3k/deidentify

    The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.

    CogStack/AnonCATDemo’s past year of commit activity
    Vue 2 Apache-2.0 2 0 0 Updated Apr 12, 2024
  • CogStackCohort Public

    A MedCAT annotations retrieval tool for cohort identification

    CogStack/CogStackCohort’s past year of commit activity
    HTML 2 1 0 0 Updated Feb 23, 2024

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