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Feature/grch38 3 #952

Merged
merged 10 commits into from
Sep 3, 2019
Merged

Feature/grch38 3 #952

merged 10 commits into from
Sep 3, 2019

Commits on Aug 26, 2019

  1. feat(grch38): Added grch38 download of genomcs_superDups and modified 

    post processing accordingly
    @henrikstranneheim
    henrikstranneheim committed Aug 26, 2019
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Commits on Aug 28, 2019

  1. feat(grch38): Fix hgncd_id format change from VEP CSQ

    @henrikstranneheim
    henrikstranneheim committed Aug 28, 2019
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  2. feat(grch38): Modifed grch37 default for snpsift

    @henrikstranneheim
    henrikstranneheim committed Aug 28, 2019
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Commits on Aug 29, 2019

  1. feat(grch38): Added modifications to download script to enable grch38 

    post processing of dbnsfp

- Minor refactoring of unzip and gzip
    @henrikstranneheim
    henrikstranneheim committed Aug 29, 2019
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  2. feat(grch38_dbnsfp): Added new postprocessing to dbnsfp 

    - Added dbnsfp as VEP plugin
- Added new parameter for dbnsfp path for VEP plugin
    @henrikstranneheim
    henrikstranneheim committed Aug 29, 2019
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Commits on Aug 30, 2019

  1. feat(grch38): Updated changelog with downstream breaking changes when 

    using grch38
    @henrikstranneheim
    henrikstranneheim committed Aug 30, 2019
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  2. feat(grch38): Modified dbnsfp parameter in snpeff

    @henrikstranneheim
    henrikstranneheim committed Aug 30, 2019
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Commits on Sep 2, 2019

  1. feat(grch38): Made snpsift dbsnfp annotations not mandatory

    @henrikstranneheim
    henrikstranneheim committed Sep 2, 2019
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Commits on Sep 3, 2019

  1. feat(grch38_3): Added grch38 config for rd dna

    @henrikstranneheim
    henrikstranneheim committed Sep 3, 2019
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  2. Merge branch 'develop' into feature/grch38_3

    @henrikstranneheim
    henrikstranneheim authored Sep 3, 2019
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