Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Release/12.1.0 #2069

Merged
merged 24 commits into from
Mar 5, 2024
Merged

Release/12.1.0 #2069

merged 24 commits into from
Mar 5, 2024

Commits on Oct 9, 2023

  1. Delete 643594-miptest_metrics_deliverables.yaml

    @jemten
    jemten authored Oct 9, 2023
    Configuration menu
    Copy the full SHA
    e1b66da View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2023

  1. Merge pull request #2056 from Clinical-Genomics/release/12.0.1 

    Release/12.0.1
    @jemten
    jemten authored Oct 10, 2023
    Configuration menu
    Copy the full SHA
    60cdffb View commit details
    Browse the repository at this point in the history

Commits on Oct 24, 2023

  1. Merge pull request #2061 from Clinical-Genomics/release/12.0.2 

    merge release 12.0.2 into develop
    @jemten
    jemten authored Oct 24, 2023
    Configuration menu
    Copy the full SHA
    1c8e608 View commit details
    Browse the repository at this point in the history

Commits on Dec 5, 2023

  1. Merge pull request #2064 from Clinical-Genomics/release/12.0.3 

    Merge release/12.0.3 into dev
    @jemten
    jemten authored Dec 5, 2023
    Configuration menu
    Copy the full SHA
    b43dc0f View commit details
    Browse the repository at this point in the history

Commits on Feb 3, 2024

  1. adding command module

    @jemten
    jemten committed Feb 3, 2024
    Configuration menu
    Copy the full SHA
    d985223 View commit details
    Browse the repository at this point in the history

Commits on Feb 14, 2024

  1. adding fastp analysis recipe

    @jemten
    jemten committed Feb 14, 2024
    Configuration menu
    Copy the full SHA
    0d3f08f View commit details
    Browse the repository at this point in the history

  2. adding fastp to install

    @jemten
    jemten committed Feb 14, 2024
    Configuration menu
    Copy the full SHA
    7e4fc74 View commit details
    Browse the repository at this point in the history

  3. adding documentation

    @jemten
    jemten committed Feb 14, 2024
    Configuration menu
    Copy the full SHA
    29217b0 View commit details
    Browse the repository at this point in the history

  4. fix fastp version regexp

    @jemten
    jemten committed Feb 14, 2024
    Configuration menu
    Copy the full SHA
    506e7f4 View commit details
    Browse the repository at this point in the history

  5. one more regexp fix

    @jemten
    jemten committed Feb 14, 2024
    Configuration menu
    Copy the full SHA
    381e518 View commit details
    Browse the repository at this point in the history

Commits on Feb 15, 2024

  1. fixing fastp thread name

    @jemten
    jemten committed Feb 15, 2024
    Configuration menu
    Copy the full SHA
    9522f3a View commit details
    Browse the repository at this point in the history

  2. adding fastp reports

    @jemten
    jemten committed Feb 15, 2024
    Configuration menu
    Copy the full SHA
    2ba1e13 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #2065 from Clinical-Genomics/fastp 

    Fastp
    @jemten
    jemten authored Feb 15, 2024
    Configuration menu
    Copy the full SHA
    20b3d30 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. adds automatic ped_check fail

    @jemten
    jemten committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    25881c3 View commit details
    Browse the repository at this point in the history

  2. loqus and clinvar update

    @jemten
    jemten committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    f0e1a93 View commit details
    Browse the repository at this point in the history

  3. adds sex_check

    @jemten
    jemten committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    33107c6 View commit details
    Browse the repository at this point in the history

  4. update regexp_file

    @jemten
    jemten committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    eadb965 View commit details
    Browse the repository at this point in the history

  5. reverting vep update

    @jemten
    jemten committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    797baf1 View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. Merge pull request #2067 from Clinical-Genomics/update_clinvar_loqusdb 

    loqus and clinvar update
    @jemten
    jemten authored Feb 21, 2024
    Configuration menu
    Copy the full SHA
    d6baf44 View commit details
    Browse the repository at this point in the history

  2. Update lib/MIP/Qcc_regexp.pm 

    Co-authored-by: Peter Pruisscher <[email protected]>
    @jemten @peterpru
    jemten and peterpru authored Feb 21, 2024
    Configuration menu
    Copy the full SHA
    dc66fad View commit details
    Browse the repository at this point in the history

  3. Merge pull request #2066 from Clinical-Genomics/peddy_check 

    adds automatic ped_check fail
    @jemten
    jemten authored Feb 21, 2024
    Configuration menu
    Copy the full SHA
    010a180 View commit details
    Browse the repository at this point in the history

  4. updating to mip v12.1.0

    @jemten
    jemten committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    efa4fe0 View commit details
    Browse the repository at this point in the history

  5. adding new rankmodel to download

    @jemten
    jemten committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    1eda07f View commit details
    Browse the repository at this point in the history

Commits on Feb 23, 2024

  1. fixing indentation

    @jemten
    jemten authored Feb 23, 2024
    Configuration menu
    Copy the full SHA
    1681e6c View commit details
    Browse the repository at this point in the history