updating download config

CHANGELOG.md

@@ -5,7 +5,7 @@ This project adheres to [Semantic Versioning](http://semver.org/).
 
 ## [12.0.3]
 
-- updates genmod to version 3.8.2 to introduce normalized rankscore, [#2055](https://github.com/Clinical-Genomics/MIP/issues/2055)
+- Updates genmod to version 3.8.2 to introduce normalized rankscore, [#2055](https://github.com/Clinical-Genomics/MIP/issues/2055)
 
 ### Tools
 

templates/mip_download_rd_dna_config_-1.0-.yaml

@@ -111,8 +111,8 @@ reference:
  - gold_standard_indels
  rank_model:
  - v0.2
- - v1.34
  - v1.35
+ - v1.36
  reduced_penetrance:
  - 2017
  scout_exons:
@@ -124,15 +124,15 @@ reference:
  - v1.4
  svrank_model:
  - v0.1
- - v1.9
  - v1.10
+ - v1.11
  vcf2cytosure_blacklist_regions:
  - 1.0
  - 200520
  vcfanno_config:
  - v0.2
- - v1.18
  - v1.19
+ - v1.20
  vcfanno_functions:
  - v1.0
 reference_feature:
@@ -900,20 +900,20 @@ reference_feature:
  url_prefix: https://storage.googleapis.com/genomics-public-data/resources/broad/hg38/v0/
  rank_model:
  grch37:
- v1.34:
- file: rank_model_-v1.34-.ini
- file_check: rank_model_-v1.34-.ini.md5
- outfile: rank_model_-v1.34-.ini
- outfile_check: rank_model_-v1.34-.ini.md5
- outfile_check_method: md5sum
- url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/
  v1.35:
  file: rank_model_-v1.35-.ini
  file_check: rank_model_-v1.35-.ini.md5
  outfile: rank_model_-v1.35-.ini
  outfile_check: rank_model_-v1.35-.ini.md5
  outfile_check_method: md5sum
  url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/
+ v1.36:
+ file: rank_model_-v1.36-.ini
+ file_check: rank_model_-v1.36-.ini.md5
+ outfile: rank_model_-v1.36-.ini
+ outfile_check: rank_model_-v1.36-.ini.md5
+ outfile_check_method: md5sum
+ url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/
  grch38:
  v0.2:
  file: grch38_rank_model_-v0.2-.ini
@@ -985,6 +985,13 @@ reference_feature:
  outfile_check: svrank_model_-v1.10-.ini.md5
  outfile_check_method: md5sum
  url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/
+ v1.11:
+ file: svrank_model_-v1.11-.ini
+ file_check: svrank_model_-v1.11-.ini.md5
+ outfile: svrank_model_-v1.11-.ini
+ outfile_check: svrank_model_-v1.11-.ini.md5
+ outfile_check_method: md5sum
+ url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/
  grch38:
  v0.1:
  file: grch38_sv_rank_model_-v0.1-.ini
@@ -1024,6 +1031,13 @@ reference_feature:
  outfile_check: grch37_vcfanno_config_-v1.19-.toml.md5
  outfile_check_method: md5sum
  url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/annotation/
+ v1.20:
+ file: grch37_vcfanno_config_-v1.20-.toml
+ file_check: grch37_vcfanno_config_-v1.20-.toml.md5
+ outfile: grch37_vcfanno_config_-v1.20-.toml
+ outfile_check: grch37_vcfanno_config_-v1.20-.toml.md5
+ outfile_check_method: md5sum
+ url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/annotation/
  grch38:
  v0.2:
  file: grch38_vcfanno_config_-v0.2-.toml