Workshop release, hopefully.

CholGen · Sep 23, 2023 · 23e3079 · 23e3079
1 parent bbead03
commit 23e3079
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diff --git a/.github/workflows/generate_release.yml b/.github/workflows/generate_release.yml
@@ -19,4 +19,4 @@ jobs:
         artifacts: "bacpage.zip"
         token: ${{ secrets.GITHUB_TOKEN }}
         body: "Latest release of bioinformatics pipeline."
-        tag: "v0.3"
+        tag: "v0.4w"
diff --git a/workflow/rules/consensus_calling_Illumina.smk b/workflow/rules/consensus_calling_Illumina.smk
@@ -46,8 +46,8 @@ rule generate_low_coverage_mask:
     input:
         alignment=rules.alignment_bwa.output.alignment
     output:
-        depth="intermediates/illumina/depth/{sample}.depth",
-        depth_mask="intermediates/illumina/depth/{sample}.depthmask.bed"
+        depth=temp("intermediates/illumina/depth/{sample}.depth"),
+        depth_mask=temp("intermediates/illumina/depth/{sample}.depthmask.bed")
     params:
         minimum_depth=config["coverage_mask"]["required_depth"]
     shell: